Conserved Protein Domain Family
EphR_LBD_A6

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cd10484: EphR_LBD_A6 
Ligand Binding Domain of Ephrin type-A Receptor 6
Ephrin receptors (EphRs) comprise the largest subfamily of receptor tyrosine kinases (RTKs). Class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphA6, like other Eph receptors and their ephrin ligands, seems to play a role in neural development, underlying learning and memory. EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling).
Statistics
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PSSM-Id: 198452
Aligned: 3 rows
Threshold Bit Score: 373.969
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ephrin binding
Feature 1:ephrin binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 # #####      ## # #                              # #    
Q9UF33         33 QVVLLDTTtvlgELGWKTYPlngWDAITEMDEHNRPIHTYQVCNVMEPNQNNWLRTNWISRDAAQKIYVEMKFTLRDCNS 112  human
XP_001344560   25 QVVLLDTTavlgELSWKTYPingWDAITEMDELNRPIHTFQVCHVMEPNQNNWLRTNWIPRQAAQKIYVELRFTLRDCNS 104  zebrafish
XP_002931822   69 DCWLKYVCm--yFTNNMYSPcsqWDAITEMDEYNRPIHTYQVCNVMEANQNNWLRTNWISRDAAQKVFVEMKFTLRDCNS 146  western clawe...
Feature 1         ##                                           #   ##  ###                        
Q9UF33        113 IPWVLGTCKETFNLFYMESDesh--gikFKPNQYTKIDTIAADESFTQMDLGDRILKLNTEIREVGpIERKGFYLAFQDI 190  human
XP_001344560  105 IPWVSGTCKETFNLLYLETDephganahFHPNDYAKIDTIAADESFTQTDLGDRVLRLNTEVREVT-IARKGFYLAFQDV 183  zebrafish
XP_002931822  147 IPWVVGTCKETFNLHYMESDdah--avkFKPTQYSKIDTIAADESFTQMDLGDRILKLNTEVREVGpITKKGFYLAFQDI 224  western clawe...
Feature 1           ### #        
Q9UF33        191 GACIALVSVRVFYKK 205  human
XP_001344560  184 GACIALVSVRVYYKK 198  zebrafish
XP_002931822  225 GACIALVSVRVYYKK 239  western clawed frog

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