Conserved Protein Domain Family
SR_Res_par

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cd03767: SR_Res_par 
Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Statistics
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PSSM-Id: 239736
Aligned: 13 rows
Threshold Bit Score: 190.998
Created: 12-Jun-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
catalyticcatalytic
Feature 1:catalytic nucleophile [active site]
Evidence:
  • Comment:Based on similarity with other family members.
  • Comment:When cleavage occurs, a phosphodiester bond is replaced by a phosphoserine bond between a 5' phosphate group at the DNA cleavage site and a Ser hydroxyl group of the resolvase.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                        
P22996       16 ARIYLRASTDEQNLERQESLVAATRa-aGYYVAGIYREKASGARADRPELLRMIADLQPGEVVVAEKIDRISRLPLAEAE 94  Escherichia coli
BAE19701     19 ARIYMRVSTDEQDLTRQAAIVESTRa-aGYYVAGIYREKASGARADRAELLRMIGDLQPGEVVVAERIDRISRLPLPEAE 97  Sphingomonas sp. A1
AAZ65817     81 ARIYLRVSTDEQDLTRQAAIVESTRa-aGFYVAGIYREKASGARADRAELLRMIGDLQPGEVVVAEKIDRISRLPLPEAE 159 Ralstonia eutrop...
NP_356778    43 VRAYLRASTKEQDAGRAKTQLESFAkdrGFSIAAFYVENESGASLKRPELFRLLSDCSPNDVLLTEQVDRLSRLNEADWE 122 Agrobacterium tu...
YP_207145    12 IYGYLRASTDEQDASRAKNELMLFAeqmGFQVACWFEENESGAQLKRPELFRLLDIAISGDVILVEQVDRISRLNTQDWE 91  Vibrio fischeri ...
CAI79536      3 IRAYLRASTEDQFAERAKEMLEQFVqerGHKIASYYRENISGTKLDRPELKRLLMDSHCNDILLVEQIDRLTRLSNSDWI 82  Escherichia coli
ZP_01111540   3 IRAYLRASTSEQDANRAKSSLKKFVsgfSKRIASFYIENKSGNSLDRPELIRLLDESESGDVLLVESIDRLTRLSPDDWK 82  Alteromonas macl...
ZP_01164964   3 VYAYLRASTEEQDATRAAEVLIKFAqekGFEIAEYFVENASGTKLDRPKLIELINTAGEGDVLLVEQVDRLTRLTAEDWS 82  Oceanospirillum ...
NP_288930     3 VRIYCRASTEGQHADRALTSLREFSkskGWQIAGEYIENASGAKLERVELMRLLSEAQSGDLLLVEAIDRLSRLEHSAWV 82  Escherichia coli...
ZP_00855221  21 IRAYLRASTKDQDSLRAKPELIAFAkahHVKITTFYQENVSGNAPDRPELNRLIEEASEGDILLIEKMDRLSRLPWETWQ 100 Shewanella sp. MR-7
YP_584705     3 IRAYLRASTADQDADRARESLTKFAteqGARITTFYVENASGASLDRNELDRLIDESRSGDVLLVEGIDRLTRLTQDDWK 82  Ralstonia metall...
ZP_01271092   3 VRIYVRASTKDQDATRALADLVAFSt-sYDDNHVEYVEHFSGTKLDRPLLAKLLKDAEQGDILLVESVDRLSRLSQDDFA 81  Psychrobacter sp...
CAD58553     10 VRAYLRASTSEQDASRARSSIDTFAterGLSICNYYIENESGSRLERPELFRLLKDCRQRDILLIEDVDRLSRLAGNDWI 89  Yersinia enteroc...
Feature 1                                                                             
P22996       95 RLVASIRAKGAKLAVpg-vVDLSELaaean----gvakiVLESVQDMLLKLALQMARDDYEDRRERQRQG 159 Escherichia coli
BAE19701     98 RLVASIRAQGARLAVpg-vVDLSDLaaeat----gvakvVLESVQDMLLKLALQIARDDYEDRRERQRQG 162 Sphingomonas sp. A1
AAZ65817    160 RLVASIRAQGARLAVpg-vVDLSDLaaeak----gvakvVLESIQDMLLKLALQMARDDYEDRRERQRQG 224 Ralstonia eutropha JMP134
NP_356778   123 ALKSEIDARQVRVVAldlpTSHMMLaaaed----pftgrMFKAVNAMMLDMLAAIARKDYEDRRRRQAQG 188 Agrobacterium tumefaciens ...
YP_207145    92 KLKLMINKKGLKVVSldlpTSYQFMsntdd-----fterMLSALNGMMLDMLAAVARKDYEDRRRRQAQG 156 Vibrio fischeri ES114
CAI79536     83 TLKKQIEQHELRIVSldvpTSWQALsdkdpsqsdpitraVITAINNMLIDLMAAMSHKDWLSRRQRQKQG 152 Escherichia coli
ZP_01111540  83 TLVASINEKGISVVSldlpTSHLTFgsfpsd---dfmrsILSAINNMLLEILAASAYKEYRERERKQKEG 149 Alteromonas macleodii 'Dee...
ZP_01164964  83 TLKRTIEDKGLLVVSldlpTSFAALqaddq----sftgdILKAVNRMLMDILATTARKDQEDRLRRQRQG 148 Oceanospirillum sp. MED92
NP_288930    83 ELKDTLNRKGLIIVSmdlpTSWQMVemagn----dltsgILRAVNAMLIDILATMARQDYETRRKRQQQG 148 Escherichia coli O157:H7 E...
ZP_00855221 101 SLKSKIASKGIIIVIadqpQTHSALtandv-----nsgfIQKALTNFMIDLAAGMARDDYETRRFRQAQG 165 Shewanella sp. MR-7
YP_584705    83 TLKQRLASKCILICAkfvpMTHDVLqatqaqrsdwahdaVKAAIRDLMIELAAAKAREDYEVRRERAEQG 152 Ralstonia metallidurans CH34
ZP_01271092  82 ILKQRIKDKGLRLVVadlpTTHTVNngm--------tgeILTVINHMLIDLLATMAKLDNDKRRERIKQG 143 Psychrobacter sp. PRwf-1
CAD58553     90 TLKKMIARKDIRVVAvnvpTTWLHLspglt----dfdnrMFSAINDMLLDMLAAVARRDYEQRRERQKQG 155 Yersinia enterocolitica

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