Conserved Protein Domain Family
PBP2_HisX_like

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cd13641: PBP2_HisX_like 
Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold
This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270359
Aligned: 41 rows
Threshold Bit Score: 296.083
Created: 23-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory ABC-transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #                                              #                      
AAF78097   36 TVTFAGIDWeSGAFITEVMKTILSKGYDCQVDSip-gnSVTLEQAtanndvQIFAeEWLG-RSDVWNkaveekKVIAVg- 112 Sinorhizobium meli...
EDQ32311   31 TVTVANMNWaSAEVLANIDNIILSEGYGCDVELvpgdtMPTLTSMmekgepDVAPeAWINaVREPLDkaveegRLVYAae 110 Hoeflea phototroph...
EFF76725   42 PIRFSGLNWeSNLVLAGIERYVLEHGYGCKTTVeigetLPMLTALqrg-dvDVTPeVWPGqIEGAWKkalasgKVLGVg- 119 Achromobacter piec...
EFV94835   40 PVRFGGMNWeSNLVLTEIERRILEKGYGCQTDVlptetLSALAAMgrg-dlDVISeIWQNsIADPWAkavatgKVKSIg- 117 Lautropia mirabili...
EAU52279   28 DVQIAEMNWaSAELMANVDKIILENGYGCNVELvpgatMTSFASMnekgqpDVAPeLWINaVRDPLNaamdegRLHSTna 107 Rhodobacterales ba...
EAQ25539   27 RVSIAEMNWaSGQIITRISEFLMTQGYGCDVTVvpsatTTAITSLaennepDIVPeLWVN-SAPAYFrlesegRVVKAad 105 Roseovarius sp. 217
EAS65574   26 KVTIADMNWnSATLLANVDSFILQHGYGCETDLvpgdtMPTGTSMvekgepDIAPeFWSNsMKAALDrgveegRILYAgt 105 Vibrio angustum S14
AAZ26034   28 DITISEMNWaSGQLVTSVSKFILEQGYGCNVQTiptstVPSVVSLaetgkpDIITeLWIT-AVPLYKelekqgKVITAtk 106 Colwellia psychrer...
EFM58979   51 TVTIASMNWaSAELLANVDNFILHNGYDCDSSIvlgdtVPTLTSMaekgqpDVAPeAWASlIPPVTQknidegKLLIAgk 130 Brucella sp. BO2
AEQ53051   58 EIAIAEMGWpSAAILANIHATLLRAEYQCAVRLvpgepEATLASMattqqpAVAPeLWVSrQPEVWNgamqasSARAAa- 136 Pelagibacterium ha...
Feature 1             #                                                    #   ##             
AAF78097  113 kTFVGa-sEGWFVPdYVVHGdparnieakapdlksvsqltdpkiaeifadpeepskgRFLNCpSGWTCEGVSTAKleayk 191 Sinorhizobium meli...
EDQ32311  111 sLSDGg-vEGWWIPkYIADAnpdiktiddalar-----------pdlfpapedpskgAVYNCpSGWNCQISTANFfrahd 178 Hoeflea phototroph...
EFF76725  120 hVYDAg--EGWYVPrYTIERhpelksaadlarm-----------kdvfadpedpgrgRIYGCpAGWACGTLNDNLlralk 186 Achromobacter piec...
EFV94835  118 tVYLGg--EGWYIPrYVAERlpelksiedlprf-----------kdefadnedpgkgRFYGCpVGWGCEVVATQIfkadk 184 Lautropia mirabili...
EAU52279  108 gPITQl-gEGWWVTpAFQAAhpeldtvvkiler-----------pdlfpdaedpskgAFIGCpAGWGCQLANANLfrafd 175 Rhodobacterales ba...
EAQ25539  106 vFAEGg-sENWWVPdYLVEAhpelatidgv------------------lanpdlvggRFHNCpDGWGCRIANDNLikafd 166 Roseovarius sp. 217
EAS65574  106 sFSDGg-eEGFWVPeYMVKKdpslatiegikkn-----------aklfthpedpeksAFYNCpAGWNCQISAGNLfealk 173 Vibrio angustum S14
AAZ26034  107 vLSDGg-tNGWWIPkYLADKhpelktiegv------------------lanpelvggRFHNApNGWGMRTTNDNLikafn 167 Colwellia psychrer...
EFM58979  131 sFVDGg-iQGIYVPkFIVDEhpeiktiadaikh-----------pelfpnpedpsrgAWSAGqQGWGGTIIASQYykayn 198 Brucella sp. BO2
AEQ53051  137 pTFAGgalEAWFVPsYVIENnsglataddiidh------------wqvfvppgetraELYSCpVEWACAIINRNMaagrg 204 Pelagibacterium ha...
Feature 1                                        #                                            
AAF78097  192 -lgetyVNFRPGtgtALDAAITSAYlqgepiFFYYWsptailgkfkLIQLeepayneacwkelss-----angkrdegca 265 Sinorhizobium meli...
EDQ32311  179 aeekgfVLVDSGsaaGLDGSIANAYnkeegwLGYYWaptailgnypMTLLgfnaefdkeswdgciv---daecadpqkna 255 Hoeflea phototroph...
EFF76725  187 -ldkdyALFAPGsgaAQKAAIVSAYkrkrdiVFYYWtptslvgaldLVKLelpafdqaaytcmtd-----pkcanpvate 260 Achromobacter piec...
EFV94835  185 klaeafNLFAPGtgaAQKAAITSAYkrkrnvVFYYWsptpmvasmdLVRLkfppydkakhqcltd-----adcanpevvd 259 Lautropia mirabili...
EAU52279  176 meakgwTLVDPGsaaGLDGSIAKAGdrgenwFGYYWsptamvgkygLIPIdfgvpfagtdnwdgcivkaeqdcadpqasa 255 Rhodobacterales ba...
EAQ25539  167 faghglEVFNHGsgdTLPASMAAAYdnrepwFGYYWgptavlgrynMVAVdmgphdpeihacnqt-----qdcatpgiss 241 Roseovarius sp. 217
EAS65574  174 ledagfDLIDPGsgaGLSGSIAKAYergeawFGYYWaptavlgkykMVKVdfgsgvdakyfkeclt---kpecvdpkasm 250 Vibrio angustum S14
AAZ26034  168 fagnkmDVFNHGsgeTLAASIASAYdahepwFGYYWaptsvlgkyeMVAVdmgafdetayacaes-----kecsnpqkts 242 Colwellia psychrer...
EFM58979  199 akdagfDLVDTGsaaGHDGSVIHAYerkrgwIGYYWeptallgkydMVRLpsgvaydeaewnrcnk---vencpdpkpne 275 Brucella sp. BO2
AEQ53051  205 -lderfDVVEPLdrfAMDGAITEAVsqrqpiLTYYWqpnalidrldLVPLdmggfdqgnaqcmai-----rdcvpfggsg 278 Pelagibacterium ha...
Feature 1                                                                         
AAF78097  266 fpsvDVAYGVNStfaseaPEIVEILEkatfplDEVNASLAYMadnkvdATAAAAEFLKTkGDIWSKWV 333 Sinorhizobium meliloti
EDQ32311  256 wpksEVYTVVTAdfakraGPAIDYLKgrawsnETVNGLLAWKdknqatGEDTAYYFLENnEDVWGKWV 323 Hoeflea phototrophica DFL-43
EFF76725  261 fkpnPVVTGVNAafakdaPKITEFLGkltvpdDAINATLGWLenegkePEDAARYFLKQyGPVWRAWM 328 Achromobacter piechaudii ATCC ...
EFV94835  260 ypenPVLTGVNTkfseqaPRTTEFLSkvslpvDVVNGMLAEMdaesleVTDVADRFLKNhADVWTKWV 327 Lautropia mirabilis ATCC 51599
EAU52279  256 wtvsEVHTIITDslknkgGIAVDYLEartypgPIMNAMLVYMgeeqagGEDAAIEFLMQhEDLWSSWV 323 Rhodobacterales bacterium HTCC...
EAQ25539  242 ypaaPVLTVVTAdfadrnPDIFALVSnisfgtQELSNLLAWQadnsasAEEAAVHFLTTsQETWRGWI 309 Roseovarius sp. 217
EAS65574  251 yppsEVDTVITTsfakraPEAVKYLGqrsftnAQMNSLLAWMednqadGETVMEEILTNhEDIWVKWV 318 Vibrio angustum S14
AAZ26034  243 lpsaTVVTAITTdlatrePEVLNLMKklsftnKQMSQLLAWQeankssSEEAAVHFITTqQDIWSAWL 310 Colwellia psychrerythraea 34H
EFM58979  276 wppdDVNTIVTKkfaegaGPAYDYLKtrswpnATVNKMLAWMadnqatGEDGAKEFLKSyPDVWTKWV 343 Brucella sp. BO2
AEQ53051  279 fapdTVVIAVAEwvfsdtPDIADYFArasmplDEMNRLLAWQaeneasAEAVAQNFLITgRDVWQDWV 346 Pelagibacterium halotolerans B2

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