Conserved Protein Domain Family
Transposon_TraM

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pfam12508: Transposon_TraM 
Conjugative transposon, TraM
Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Statistics
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PSSM-Id: 432600
Aligned: 26 rows
Threshold Bit Score: 155.912
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Poras_1543 215 IADHKPLVSALDQPMSDEEFIEMygAKERNMSFHSLSNn-SAHTDGRNTLCVVVDKTTTLKEGDYVALRLLET-ARVQQT 292
WP_013407011   243 SPTRKKAVSALYREPTDNEFLANw-SENRNRGFYTAGSv-EQVAQPKNSVKACIQETQTIIGESGVRLRLLEP-AQTPNR 319 Leadbetterell...
WP_014791685   230 YSVSNKVVSQLPRALSDEKLLENw-VQQNQRGFHSMESqkEEKPMLKNSIKACIHTEQRIDKNNRIPLRLLEP-IRVAGM 307 Ornithobacter...
wustl:BV0903   138 KTEPEDTVP----------------EETPRRGFNSVr---LVRQDERNVIRAFVHSTQTVMVGATLKMQLAENcLTDDGQ 198
EHQ30899       190 VERQQQQAKAKALAGQPAALEVRkaPGNGTD-FNTI-----KPEAHSELISAMIDEELTAYAGSRIRLRLLED-IWAGKN 262
WP_008506560   197 KKEAETKAKAAAKQAIENTLAVSkaDYASSD-FNTV-----LPEQHPGLMTAVIDENVTGYAGSRIRLRLLED-IKAGNA 269 Mucilaginibac...
WP_005816128   180 AEDSKAVKALDE---EDKAQEVVkkVKVTSDYFNTL----TQNEHEPKLIKAIIDEDVKATDGSRVRLRLLDD-IEIGET 251 eubacteria
EGQ11796       259 SKVSQPYDTPHRKP-EEKPVIVKkvMEGNADKFNTVSA---EPTTDVPLIRAMIDKTTKAHEGTRLRFKLLDD-VTLKGT 333
wustl:BV3295   214 RQAEKE---------RNRPKLVIksGDTNAEKFHTVTS--PDDVAEAKLIRAMIDQTTKAKEGTRLRFKLLDD-ITVSNT 281
jgi:Dfer_0943  238 AAVTDQVQFTLLGGQGELSDSLKhgTSTQQKGFHSLENq-RSATQTQNAIEAIIDQNQTLVTGATIKFRLTTD-IFIAGT 315
jgi:Poras_1543 293 SIPKHSLLMAQAK-IDGNRMQLLIKSIEVNGRILPVKLSAYDTDGQMGVYIPGSEEVSALKEMGANVGGSM-GTSFTFS- 369
WP_013407011   320 TIPQGTILTAIGK-FQGGRLQLKVTSIELDGNIIPVDITIYDLDGQQGLYVPYSPEMNALTEMAGNMSQTS-GTSLMLT- 396 Leadbetterell...
WP_014791685   308 VLPKGTLLTAMAK-MGEGRLLLDIRSLEYQGRIVPVSVTAYDLDGQRGLYIPYTPGANAFREVAAGLSQSS-GINYTFS- 384 Ornithobacter...
wustl:BV0903   199 RIRKGTPVFGEVTgIDGERVLVKITSVNLAGNILPFEKEVYSEDAMEGIYVPGNAKAETIKEAEAAGVSGT-NTSISGG- 276
EHQ30899       263 LIPKGTVLYGLVNgFTQQRVTFLISSVMSGGQILPVKLSVYDQDGMLGLYVPASAFRDFTKDLSGNTIQG-----VNIEs 337
WP_008506560   270 LVKKDTYIYALISgFSGQRVTLTIKSILYNGQLLPVKLDVYDMDGLLGLYVPSSQFRDFTKDLGTNSIQG---VSIDGN- 345 Mucilaginibac...
WP_005816128   252 VVKKGSYLYATMSgFGSQRVKGSINSILVDDELIKVSLSLYDTDGLEGLYVPGSQFRETTKDVASGAMQS--NMNIDQ-- 327 eubacteria
EGQ11796       334 RLRKGTYLYGTVTgFGQQRVMATITSILVRDKFIKVGLSVYDNDGMEGFYVPESAFRDLMKDAKANALQS--NITLD--- 408
wustl:BV3295   282 KLKKGTYLYGTVTgFGQQRVKATITSILVGDKFINVKLSVFDNDGMEGFYVPESSFREFVKDASSSAVQQ--NISFESE- 358
jgi:Dfer_0943  316 RIPAGSFLYGKSS-LNQERLRVNIESVKSGNSLFPVSLSVYDMDGMEGIYVPGALSRDVGKESSDRAIQGInIPIID--- 391
jgi:Poras_1543 370 SSAKD-----QIISEVTRGVMQGAGQLLQKKLRTIKVTLKGGY 407
WP_013407011   397 QSAGQ-----QIAADLSRGVVQGISGYFSKKVRTPKVTLKAGH 434 Leadbetterella byssophila
WP_014791685   385 SSAKD-----QIVSEVGKGVLQGTSSYLSKKIAQPKIKVKAGY 422 Ornithobacterium rhinotracheale
wustl:BV0903   277 LDMGS-----QIVAGAANSVINATKSAASKNIRKIKVTIKTNY 314
EHQ30899       338 GSAGN-----QLLMSSMDKVFQSTSSAIASAIRKNKAKIKYGT 375
WP_008506560   346 SQNGS-----QFLMSTADKLFQSTSTAIASAIRKNKAKIKYNS 383 Mucilaginibacter paludis
WP_005816128   328 SGANNsf--sQWGMQAVTNAYQKTSNAISKAIKKNKVKLKYGT 368 eubacteria
EGQ11796       409 GGYGGglsseAVALQALQNMYQSATSAMSANIRKNKARIKYNT 451
wustl:BV3295   359 DGYGSgisgeALALQALQNVYNSASSAISSNIRKNKAKIKYNT 401
jgi:Dfer_0943  392 PSLGA-----QAASAG----IEAAKTFLGRKTKLIQVSVKAGY 425
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