Conserved Protein Domain Family
D-Ala-D-Ala_dipeptidase_Aad

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cd14840: D-Ala-D-Ala_dipeptidase_Aad 
D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase)
D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. This subfamily includes Lactobacillus Aad peptidase and belongs in the MEROPS peptidase family M15, subfamily D.
Statistics
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PSSM-Id: 350617
Aligned: 256 rows
Threshold Bit Score: 181.467
Created: 14-Jan-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputative Zn
Feature 1: putative active site [active site], 5 residue positions
Conserved feature residue pattern:R H D [ED] HClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                            #                           
P77790        20 ELKYACADNITGKAIYqq-arCLLHKDAITALAKSISIAQlsGLQLVIYDAYRPqQAQAMLWQACPDPQ--YVVDVTv-- 94  Escherichia col...
KER09324      29 ELRYATTNNFTGNVIYkt-arCFLQRPVAERLSRVQKKLEaqGYRLKIWDGYRPmSAQQILYDATPDDKkgYVADPKl-- 105 Chlorobium sp. ...
WP_012499987  39 DMRYATKNNFTGEKIYsa-arCLLRPKVAKRLSRVAKRLRhkGYGVKVWDAFRPkSAQEKLWNATPPKLrrYVANPKk-- 115 Chloroherpeton ...
OLA96554      22 ELRYAARNNLVGQPLYpsgtrALARPEVASALALAQGFLRryQYGLKIWDAYRPvAVQAKLWHVLHNSD--YVANPGlgv 99  Verrucomicrobia...
OLD85818      56 ELRYATSENIAHRPLYpsrmqPLIRAGVARRLITAQAILRryNCGLKIWDAYRPrDAQAQLWRLAPRND--YVVNPHggs 133 Verrucomicrobia...
KRP33889      44 EVRYGTEKNITGKKIYpd-gcAWLRQEAIVKLARVARELRenGYRLVLWDAWRPrYAQRALWAAQPDGR--FLTPPTk-- 118 Verrucomicrobia...
WP_006981421  14 EMRYATDRNAAHAVIYplrarALVRKSVAKRLRQVQSELNkvGLGLKIWDAYRPaWAQDALWKAVPDPE--HLVDPAr-g 90  Chthoniobacter ...
OUV82526      76 DLRYTQESAIVKKPLYaknmpALLRPETAVRLRRANDLVKxyGYRIKVWDAYRPpSAQLVLWDSSGHDDr-FVANPFs-q 153 Verrucomicrobia...
WP_078813211  41 DLRYSTTQNVLGRPVYppnmpCLLRASTAKKLKKAQTQLKrqGYGIKIWDAWRPpEAHQLLFGQADSSG--MFLDPIh-g 117 Prosthecobacter...
WP_009962463  71 DLPYRTKKNVCWQPLYpqdmpCLLHIRTVEKLRVAQEILRskGFGLKIWDAWRPpEVQESLFEHGGYTG--MFTPPSl-m 147 Verrucomicrobiu...
Feature 1           #      #                                                        #  #         
P77790        95 GSNHSRGTAIDLTLRDEHGnILDMGAGFDEMHERSHayhpsvppAAQRNRLLLNAIMTGgGFVGISSEWWHFELPQAASY 174 Escherichia col...
KER09324     106 ISKHSRGAAVDLTLVDSAGgYIEMPTDFDAFVPAAAitysklskAALKHRTILHDAMTSeGFLTVKGEWWHFNAPDWKDY 185 Chlorobium sp. ...
WP_012499987 116 GSKHTRGVAVDVTLTDTLGrELQMPTPFDTFNIRARsnyenlpkKAIRNRTILHDAMKAeGFLSVSGEWWHFHDAEWRCY 195 Chloroherpeton ...
OLA96554     100 GSLHSWGVAIDATLVDAWNrPVRMPTDFDDFTPAAMwryvgpspEVSAHVHMLQYAMHKaGFWGMRTEWWHFTIADWKKY 179 Verrucomicrobia...
OLD85818     134 GSFHSWGVAVDATLVDDWGrPLSMPTDFDDFTPAAMlrytgrdpLVRNHLYLLQTTMADaGFYGLRTEWWHFTTSDWKRY 213 Verrucomicrobia...
KRP33889     119 VSRHTRGTSVDVSLADKDGrILEMPSDHDDFSKKADedfsdvskEVANRARILRRAMFAaGFSGVPAEWWHYDLRDWADY 198 Verrucomicrobia...
WP_006981421  91 GSYHTWGIAVDVTLVDLQGrEQRMPSDFDDFTPAAKaeyagtdgGVAARLRVLRTAMFNaGFAAIHDEWWHFSAQDAYLF 170 Chthoniobacter ...
OUV82526     154 PSQHSCGTAVDVTLIEKSGkAVEMPTGFDSFTPQAAaayqhpdpMVMKRKKXLQQAMRKaGFFPLPNEWWHFSDRNFRSY 233 Verrucomicrobia...
WP_078813211 118 WSRHCGGISIDATLVDLQGrEQRMPTAFDEDLHQASshqqpkdpEIRRNLTLLHEAMTEaGFKPLPGEWWHFDDLEFLYR 197 Prosthecobacter...
WP_009962463 148 WSRHCSGTAVDVTLVDATGrELEMPTGFDEADAKTShnsplpseEVKSRRMSLQLAMTAaGFSMLDTEWWHFDDAEFDNG 227 Verrucomicrobiu...
Feature 1           
P77790       175 PLL 177 Escherichia coli K-12
KER09324     186 EPL 188 Chlorobium sp. GBChlB
WP_012499987 196 PLL 198 Chloroherpeton thalassium
OLA96554     180 LPE 182 Verrucomicrobia bacterium 13_2_20CM_55_10
OLD85818     214 VPE 216 Verrucomicrobia bacterium 13_1_20CM_4_54_11
KRP33889     199 QPL 201 Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120924-bin69
WP_006981421 171 APV 173 Chthoniobacter flavus
OUV82526     234 PST 236 Verrucomicrobiaceae bacterium TMED137
WP_078813211 198 RIP 200 Prosthecobacter debontii
WP_009962463 228 GVP 230 Verrucomicrobium spinosum

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