Conserved Protein Domain Family
TssC

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pfam17541: TssC 
Type VI secretion system, TssC, VipB
T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. VipB is a family of Gram-negative type VI secretion system components of the tail sheath. They have been known as COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. VipA and VipB (TssB and TssC) proteins were shown to form a cog-wheel like tubular structure in V. cholerae that was noticed to resemble T4 phage gp18 polysheath. Two beta-strands of VipA and four beta-strands of VipB intertwine forming the middle layer of the sheath. The sheath assembles around an inner Hcp tube and is attached to a structure called a baseplate that spans the bacterial membranes. Importantly, VipA/VipB sheath was shown to form a long contractile organelle in V. cholerae and in E. coli, suggesting that sheath contraction powers the secretion.
Statistics
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PSSM-Id: 435933
Aligned: 17 rows
Threshold Bit Score: 756.487
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_008585742    30 LDAHLDALARLGGFDLLESAIDNVQNLNPERKARKKIFLDEAAKKEERNELKKTLSWWIDVLGKTDELGEMVQDCEHQAA 109 Niabella soli
jgi:Cpin_2302   26 LQENIDILAKFGGFDLLEGAIEGVQNLNPDRKARRNIFLTESTKKGERDKLKKTLELWEKVLTEAQDLPDMVSFCTEHSE 105
jgi:Niako_2601  28 LENSVQGLAKFGGFDLLESAIDAVQNINPERKARKKIFLEENSKKEERTALKKTLKLWLDVLQTSDDPAQMIQTCNDRSE 107
WP_015813037    23 LETGLPQLAKYGSFDLVETIIEGAANINPEKKARKKIFLTEADKKKERQQLKKRLELWSELLSSAESVPDMIEAGQKQAD 102 Dyadobacter f...
WP_013668056    29 LAESLEKLVKVGGIDLLEASIDGLQNLNPTRKARKQIFLTGSEKKKERQELKKKIELWLEILENADSVAAMMDRSRQKLE 108 Sphingobacter...
ERJ97819        28 AASSLDKLKEYGGFAFLENIIDGFSNLNPTRKARRNIFLTDEQWSGERKVLANRLSVWLELLRTGESAEKMRDRAKDKAQ 107
CCB70767        23 IISNTHLLDEYGGFAFLENVIDGLSNMSPNRKARKNIFLNDLQWEGERNNLLNKLDLWITLLKNSDSIESMIASANKKAE 102
WP_068591991    21 LKEKSDELAKYGGFDLLEASIEGVQNMNPDRKARKKIFLTENNKKEGRDTLKKTLEIWSSILSSSDSISEMVEESEKRSK 100 Cochleicola g...
WP_056067939    24 LEQNVESFIQYGGFDLLEGAIEGVQNLNPERKARKNIFLSESSKKAERQALKTVLKLWAESLKTTDNLLDLVSESAKKSD 103 Flavobacterium
WP_042506825    20 IQEKSNALTKYGGFDLLESAIDNVQNLNPERKARRKIFLTENNKKQERSDLLKVLKLWSETLKSDGDLIDIIEKTDEKAE 99  Algibacter
WP_008585742   110 IADNTLKSNLKKALDRTRELERSYRSVASFFKNTESQKVKNISVMNAELDQLKDLDNTRFIDHIQAELVNNYDRLDLRNN 189 Niabella soli
jgi:Cpin_2302  106 QSERVLNSNLGEAVEATRELEQSYRNVALFFKNTESDKVKNVAFINVEQDQLKDLDNTRFIDAIHQELVSNYDRLDLRDN 185
jgi:Niako_2601 108 VAGQVLKKNLKEAVKETGQLERSYRSVALFFKNTESLKVKNVSVINADPDQVRDLDNTRFIDAIHNELTDNYDRLDLRNN 187
WP_015813037   103 SAFELLKENLGKAVEQVRPLEQSYRSVAMFFKNTEQDKVKNVTFLNAAPDQLQDLDVTTFIDAVGEELASKYDRLDLREN 182 Dyadobacter f...
WP_013668056   109 EAEASLQRNLAIALEASRALEQAYRSVHLFYQNTEADKLKNVVLLNASLEQLKDLDNPRFIDYVSTELKQNYDRLDLRDN 188 Sphingobacter...
ERJ97819       108 SVEDLLYKNLHTALNRVHDLETAYRSVALFYKNTESSKVKNVTIVNADMAQLKDLDNTLFIDYIGNELSQNFDRLDLRRN 187
CCB70767       103 LAKKTLNTNLKYALETTKELETSYRSVALFYKNTESDKIKNVTIVNADLSQLKDLDNTLFFDYISNELKQNFDRLDLRKN 182
WP_068591991   101 SAGVTLNKNLGKAINETRDLERSYRSMALFYKNTESDKIKNISIVNAELEQLKDLDNTRFIDAISSELNATYDRLDLREN 180 Cochleicola g...
WP_056067939   104 IAEQTLKKNLAIAVAESKELEENYRTLSLFYKNTEESKVKNVSIMNAELDQLKDLDNSRFIDNIQEELVNGFDRLDLRQN 183 Flavobacterium
WP_042506825   100 HSKAVLKKNLKIALDETRELEASYRSVALFYKNTDEASIKNATIVNAEMDQLSDLDNTRFFDYIREEIVSSYDRLDLRDN 179 Algibacter
WP_008585742   190 YSILVLPGYLGSNKVVEKWAKIAHDNKVMLVTDFENLDTPDDVMELFEAANLTGGDPYRSNVMMACNWLVGRGKVDAVGE 269 Niabella soli
jgi:Cpin_2302  186 YSLLVIPGYLGSNKVLEKWAKIAYENKTMLITDFSHLDAPDDVMEMFELANLTGGEIHRSNVMMTCNWLVGRGKFDEINE 265
jgi:Niako_2601 188 YSLLILPGYLGSNKVIEKWARIAYENKVMLVTDFENLDSPDDVMELFEAANLTGGDPYRSNVIMACNWLVGRGRFAEIGE 267
WP_015813037   183 YSILNVPGYLGSGKVVDKWAKMAHKNKVMLLTDFMHLDAPEDVMELFESANLTGGSAHLSNVMMTCNWLVGRAKHDDLGE 262 Dyadobacter f...
WP_013668056   189 YSLLVVPGYLGSNKIIERWAKIAHENKAMLVTDFADLDHPDDVIDLFGEANLTGGDVYRSNVIMTCNWLIGRGKVEEVGE 268 Sphingobacter...
ERJ97819       188 YSILIIPGYLGSNAVLDKWAKLAHNNKVMLVTDFQDLETPDDVVDIFFNADHTGGDVYKSNVIMTCNYLLGRPRVAEVGE 267
CCB70767       183 YSILSIPGYLGSNAILDKWSKIAHENKAVLLTDFQDLETPDDVIDIFFNANHTGGDVYKSNTIMTCNYLLGRNRVDEVEE 262
WP_068591991   181 YGILVIPGYLGSNKVVEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFEAANLTGGDKYRSNVIMGCNWLVGRGKHDEVGE 260 Cochleicola g...
WP_056067939   184 YSLLVIPGYLGSNKVIEKWAKIAYDNKVMLITDFQHLDEPDDVMEMFESANLTGGDTYRSNVMMACNWLVGRGKHDEIEE 263 Flavobacterium
WP_042506825   180 YALLVLPGYLGSKAVVDKWAKMAHSNKVTMVTDFAHLDEPDDVMELFESANLASGDAYLSNTIMTCNWLVGRNKETELGE 259 Algibacter
WP_008585742   270 EDHLYIPPSSSLAGKVYYTLMSQVTAGKKYGTMNEVDGVKFDLKKSEIAGLEKLGLIPMAKEYGKVMAFSAKTLFNGDNI 349 Niabella soli
jgi:Cpin_2302  266 QDNLYIPPSGALAGKVYKTLMSQVTAGKKFGGMNEVDGVKFELKKSEIAGLEKMGLIPMVKEYGKVMAFSAKTLFNGDNI 345
jgi:Niako_2601 268 EDDLMVPPSSALAGKIYNTLMSQVTAGKKFGGINEVDGVRFDLKKSEIASLEKLGLIPMVKEYGKVMAFSAKTLFNGDNL 347
WP_015813037   263 EDDLYIPPSTALAGNVYKTLMSQVAAGKKHGTLSEVDGVRFPLKKSEIADLEKMGLIPMVNEYSKVMAFSAKTLFNGDNV 342 Dyadobacter f...
WP_013668056   269 QNDLTVPGSAALAGKIYHTLMSQVTAGKKHGSLNEVDGVRFNLKKSEISILERLGLVPMVNEYGKVMAFSAKTLFNGDNI 348 Sphingobacter...
ERJ97819       268 EENLYVPGSGALAGKIYSTLMSQVVAGKKFGSLNEVESVRFDLKKSEISELERMGLVPMVNEYSKVMAFSAKTLFNGDNL 347
CCB70767       263 DEHLYVPPSTALAGKLYKTLMSQVVAGKKFGGLNEVESVRFDLKKSEISELEKMGLVPMVNEYSKIMAFSAKTLFNGDNL 342
WP_068591991   261 EDDLFVPPSGALAGKIYNTLMSQVTAGKKFGGLNEVDGVRFDLKKSEIAQLEKMGLVPMVNEYGKVMAFSAKTLFNGDNL 340 Cochleicola g...
WP_056067939   264 DDHLFIPPSTALAGKVYNTLMSQVTAGKKYGGINEVDGVKFDLKKSEIANLENLGLIPMVNEYGKVMAFSGKTLFNGDNL 343 Flavobacterium
WP_042506825   260 EEDVFVPPSGALAGSMYKTLMSQVTAGKKHGGLSEVESVRFDLKKSEIATLESLGLVPMVNEYGKVMAFSAKTLFNGDNI 339 Algibacter
WP_008585742   350 GLQTYSVVRVFDYVAKVMMDFLNRRAFENFNANTRKELNSQIVKFLDGITGPSKLIENFTIKRFEQDPVQKDRIHLDIHL 429 Niabella soli
jgi:Cpin_2302  346 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFNANTRKDLMKQIIRFLDSITGPDKLIEDFNVRRFEQDPIQKDRIHLNIHL 425
jgi:Niako_2601 348 GLQTYSVVRVFDYVTKVMMDFLNRRAFENFNASTRKELNGQIVKFLDGITGPNKLIENFTIKRFEQDPVQKDRIYLDIHL 427
WP_015813037   343 GLQTYSVVRVFDYITKVLIDFLNRRAFENFDYNTKNDLKKQIIKFLDSVTGPGKLIEKFSVMRFEQDKNQKDKVYLDIHM 422 Dyadobacter f...
WP_013668056   349 GLQTYSVVRVFDYITKVLFDFLNRRAFENWNSKTERDLRSQIVKFLDRIQGPDRLIEHFKIMRFERDEVQKDTIHLDIHI 428 Sphingobacter...
ERJ97819       348 GLQTYSVVRVFDYISKVLFDFLNRRAFENWTTRTEADLRSQIVRFLDSIQGPTRLIEKFKVIRIEQDPKQKDRVLLDIHL 427
CCB70767       343 GLQTYSVVRVFDHITKVLFDFLNRRAFENWTTRTEADLRSQIIKFLDGIKGPTNLIEKFTVMKIEQDKTQKDRILLDIHI 422
WP_068591991   341 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFNARTRKELMGQIVKFLDGITGPDKLIEDFSIRRFEQDPNQKDRVYLDIHM 420 Cochleicola g...
WP_056067939   344 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFNAKTRKEILNQIVKFLDNVAGPDKLIEDFEIKRFEQDPNQKDRIFLDIRL 423 Flavobacterium
WP_042506825   340 GLQTYSVVRVFDYISKVLMDFLNRRAFENFNTKTRNEILKQIVKFLDGVTGPDKLIENFDIKRFEQDRDQKDKIHVDIRL 419 Algibacter
WP_008585742   430 KPYFPAKTFLIKLEGQKGDdpDGVDWMSKYEQ 461 Niabella soli
jgi:Cpin_2302  426 KPYFPAKNFLIKMEGHKGE--DATEWDTEYEQ 455
jgi:Niako_2601 428 KPYFPAKTFMIKLEGQKGDd-SEVDWSSKYEQ 458
WP_015813037   423 VPYFPAKNFMIALTGQKGDdlDAAAWAAEYAQ 454 Dyadobacter fermentans
WP_013668056   429 TPYFPAKSFVVKLDGYKGEn-EETTWSSEYAQ 459 Sphingobacterium sp. 21
ERJ97819       428 TPYFPAKSFVIQLEGRKGDapEEANWESQYNQ 459
CCB70767       423 TPYFPAKSFVIQLDGHKGDgpEDAVWHSDYKQ 454
WP_068591991   421 KPYFPAKNFMIKMDGQKGD--DGNEWDAEYEQ 450 Cochleicola gelatinilyticus
WP_056067939   424 KPYFPAKNFLIKMDGQKGD--DGNDWDTEYAE 453 Flavobacterium
WP_042506825   420 KPYFPAKNFLITMDGQKGD--EGTEWDTDYAE 449 Algibacter
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