Conserved Protein Domain Family
ClC_like

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cd01033: ClC_like 
Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Statistics
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PSSM-Id: 238505
Aligned: 13 rows
Threshold Bit Score: 315.387
Created: 6-Mar-2002
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative ionputative pore
Feature 1:putative ion selectivity filter
Evidence:
  • Comment:Based on sequence similarity to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                #####  
AAD53928     13 GCLTGLGGMLLSWILHAVQHIAYGyslqhviseesflkGSMAASPLRRLEVLVFCGAVVGGGWGl----LRHFGSPLVSI 88  Zymomonas mobilis
NP_269483    45 GLTAGLVAFILTKAIHLIQSLSFGfsqg------sfstMIASVPPQRRALSLLFAGLLAGLGWHl----LAKKGKDIQSI 114 Streptococcus py...
NP_688188    19 TVMAGVGAILMHYVLMFTEWLAFGdsre------ntlsLLNSVTPIKRVLSLTLVSFLASLSWYy----LQIKPKQITSI 88  Streptococcus ag...
BAB97456     17 GVGTGLFVAALNWSAIGVERLVYGadhl------hnynPVANVSPLRLSITVIVLSVVASWAWFf----VHRTGPKEVSI 86  Corynebacterium ...
ZP_00732099  16 GIISGLIGTALTHILHGIQHIAFDyglnge--nmsfreGVLQSSAERRWLALTFCGIVVGIGWYs----VHRYGKKLLSV 89  Actinobacillus s...
CAH13013     26 GIGSGFLGMCLAMLLHYLQHIAYGysplhiisnetfleGVRASSSERRIGILFLCGLIAGMGWWa----LYRFGKPLVSI 101 Legionella pneum...
ZP_01164005  18 GIVVGFSSLILSAILDLTEHYFLNfnet------nkipVNINIFPIHRFVSVLIGGIIATIIWY-----FLQRHYHPVSI 86  Lactobacillus re...
AAT89587      4 GVGAGVGGGAVVLALHALQHLAFGyseg------afldGLRESPPADRVVALVVAGVIGAVGWWllrgwGRRRADHAVVA 77  Leifsonia xyli s...
AAT81840     16 GLASGLIGGLTSELSHLIEVCAFGvpfs------ssttGVGEVVMWRRLVAPIMGALIAGLTWRw---lRPFPSGSITSV 86  Propionibacteriu...
ZP_00420501  43 GIGAGFGGMLLALLLHAIQHVAYGydlahvigaesfltGVTRAEPLRRAGVLIVCGLVAGGGWWa----LYRYGRPLVSI 118 Burkholderia vie...
AAY29669     21 GVIIGAGAGLLTLLLYGVEHVMLGyveg------selpGPFGVPAVRRAISVTIGLAVAGVIWYf----LRNKTTKVPSV 90  Bifidobacterium ...
NP_696122    21 GVLIGVGAGLLTLLLYGVEHVLLGyieg------pelsGPFGVPAARRAISVTVGLSIAGIIWYl----LRHKTTAVPSV 90  Bifidobacterium ...
NP_962624    24 GVLAGIAGVATTLVLRVVQHATYHysfg------allaGVAASSPIRRVLGPMVGAALAGLGWWl----LRRRTDVPPLA 93  Mycobacterium av...
Feature 1                                           #####                                       
AAD53928     89 TQAVAANKr---vMPFWTTIIHVLLQIVTVGLGSPLGREVAPRELGSLIGERFAFWGGLs------ENQRRILVACGAGA 159 Zymomonas mobilis
NP_269483   115 QQIIQDDIs----FSPWTQFWHGWLQLTTVSMGAPVGREGASREVAVTLTSLWSQRCNLs------KADQKLLLACASGA 184 Streptococcus py...
NP_688188    89 KQQVVFKDfsvkkSPYWLHIGHAFLQLIYVGTGGPIGKEGAPREFGAINAGKISDLLALk------VLDKRLLIISGAAA 162 Streptococcus ag...
BAB97456     87 VGAIRGEK-----MPILETIASAFLQVTTVAAGAPVGAENAPRIAGALVGERFSRWLQLd------IDAKRILVASAAGA 155 Corynebacterium ...
ZP_00732099  90 KQGLDNPQq---gVPFFKTVGHALLQIITVGLGSPLGREVAPREMSVAFGSAWVRKAGLn------DTDAKLILACASGA 160 Actinobacillus s...
CAH13013    102 ASAIKSGKp----MPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYWLSSKAGLt------PEESKIMLACGAGA 171 Legionella pneum...
ZP_01164005  87 KNALNGKE-----MPLRKTFIHVVTQIFFVGTGNSIGRELAPREAGAAIAQKWSRVLDSyrwlhinDEDKRLLIAAAAGA 161 Lactobacillus re...
AAT89587     78 VQAVVDGQr----MSVLVTLANAALQVVIVGLGASIGREVAPREVGALWASWLSERAGVt------ARERRILVACGAGA 147 Leifsonia xyli s...
AAT81840     87 RQAIDSPTr----LRPVETIVDALAQLVVVGSGSSLGREAAPRQMAALAAQGLSDTFRVd------VATRRVVLASAAGA 156 Propionibacteriu...
ZP_00420501 119 RRAVRAADp---rMPLVSTTVHALLQIVTVALGSPLGREVAPREIGALLAGRLAQRAGLt------PADCRLMVACGAGA 189 Burkholderia vie...
AAY29669     91 KKAVAGER-----MPVWQTLVHVVLQIGIVGSGASIGREVAPRELGAMLAQRFCDLFHIeg---adGIDRRMVVAVAAGA 162 Bifidobacterium ...
NP_696122    91 KKAVAGKR-----MPFWQTIAHVVLQIFIVGSGASIGREVAPRELGAMLAQRFCDLFHIeg---vdGIDRRMVVAVAAGA 162 Bifidobacterium ...
NP_962624    94 ETIARSER-----VPRLAWSIDAVLQVLLVGSGASLGREGAPRQFASALGDFGIGWLRRl-----sSRDREILLACAAGA 163 Mycobacterium av...
Feature 1                                                                                       
AAD53928    160 GFASVYNVPLSGALFALEALLm-------TWASPVVIVALLTSALSARMAWILLGNSMVYHVPawpvdtrLMLLALLAGP 232 Zymomonas mobilis
NP_269483   185 ALGAVYNAPLATILFILEAILnr-----wSLKNIYAACLTSYVAVETVALLQGRHEIQYLMPQqhw-tlgTLIGSVLAGL 258 Streptococcus py...
NP_688188   163 GLSAVYQVPLASVFFAFETLAlg-----iSLKNIVTLLASTFGAASIAQLVISTAPLYHISKMsln--sqSLAFMFLIVL 235 Streptococcus ag...
BAB97456    156 GLGASFHLPLAGVLFALEVLLve-----aSTRTVVIAIITTTAAVATTGFFVQTPDVFSTVPLt------ESPWMLLAAM 224 Corynebacterium ...
ZP_00732099 161 GLTAVYNVPLASTIFILETMVls-----iSTRSLGAALVTVVLSTCVSRFFLGDLVQYDKVTPfai-nteLLIFSAIIGM 234 Actinobacillus s...
CAH13013    172 GLAAVYNVPLGGAVFVLEVLLct-----sNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEFsls--tpLIIWSILASP 244 Legionella pneum...
ZP_01164005 162 GFAGVYIAPITGTVFCLEILYrr-----iNTRSVSVSLIMSVIATMIGSILKGFEPYYIVGSRdfs--llSVPLAIVLGL 234 Lactobacillus re...
AAT89587    148 GLAAVYSVPFGGAVFALEILLae-----iSFAAVLPAFAVSGVAALVASSVVPANPLYTVQQVpls--pqIVVWALLAGP 220 Leifsonia xyli s...
AAT81840    157 GLASVYNVPVAGALYALELTVrpdlrtkrGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAAtvt--gpGLGWMVLVVA 234 Propionibacteriu...
ZP_00420501 190 GLAAVYNVPLGGAVFVLEVLVgt-----fELRALVVALVTSALAAAVAWLGLGNEHQYTVPPFvls--tpLVAWSIVCGP 262 Burkholderia vie...
AAY29669    163 GLGGVYNAPLAGMFFAVEILLvd-----vTLEKVAFGLGMSAIAAFVAASIKGHHTFYDITAMqpqstptLMLFAVLCGA 237 Bifidobacterium ...
NP_696122   163 GLGGVYDAPLAGMFFAVEILLvd-----vTIEKVAFGLGMSAIAAFVAVAIKGHHLFYDITAMqpestptLMVFALICGA 237 Bifidobacterium ...
NP_962624   164 GLGAVYAVPLAGALFAVRILLrt-----wRLRAVGAAFLSSGVAVAVGSAVTGDQPNLRWPVEest--ylLTAHGLLLAP 236 Mycobacterium av...
Feature 1                                                                                       
AAD53928    233 IFGIAAHYFRFWSQKITASri---kDNRRLALVAILCFAAIGLLSmWFPEILGNGKGPVSLAFndn-------------- 295 Zymomonas mobilis
NP_269483   259 ILSLFAHAYKHLLKHLPKAd----aKSQWFIPKVLIAFSLIAGLSiFFPEILGNGKAGLLFFLhee-------------- 320 Streptococcus py...
NP_688188   236 CVTPIAISFRYLNQKVTERr----iKNIKILLSLPVVSLIVSVLSiVYPQILGNGNALVQEVFkg--------------- 296 Streptococcus ag...
BAB97456    225 VTGVVAGMCGHWFSAAAHKmaqaspKGVKILWQMPLGFVVIAAVIyFFPETLANPRWLADSMLgdg-------------- 290 Corynebacterium ...
ZP_00732099 235 LIPFVVQGFRRSTQHVPFLq----rTDKRIIPVAVLLFSLIGFISiYQPEILGNGKPGNQLTFgem-------------- 296 Actinobacillus s...
CAH13013    245 VLGFFAFWFIQIATIQRSKa----mHNWQMILACLINFLIIGLFAiYFPSLLGNGKSPAEMEFdqs-------------- 306 Legionella pneum...
ZP_01164005 235 ILGVTGTWFKQGVKAASSKr----aTGKNIFWQLPLLSFSAGAIAaFYPQIMGNGRGLAQLAMntttv------------ 298 Lactobacillus re...
AAT89587    221 LFGVAAVGFVRLVSFAQARr----pRSWGILIAMPLTFAAVGVVSlGMPAILGNGRALGQLALsat-------------- 282 Leifsonia xyli s...
AAT81840    235 VSTVVGAGMGVLFGEMKRRv----pVTSRLWWTVPLGSAGVTAIAlAAPQVVGNGQVIVNLVLahp-------------- 296 Propionibacteriu...
ZP_00420501 263 LFGFAAYGFVRLTTRARADa----pKGAWLPVLALVNFAVIGLLAmRFPQLLGNGKGPASLGFdgt-------------- 324 Burkholderia vie...
AAY29669    238 ACGVAGAWFRKGSQWAESHq----sHDKHILWQMPLAGLVTGLAAiVVPQVMGNGRAAAQLGFstfvpegsaaagasqsa 313 Bifidobacterium ...
NP_696122   238 ACGVGGALFRKGSQWAEAHk----pTGKAILWQMPLAGLITGLVAiVVPQVMGNGRAAAQLGFst--------------- 298 Bifidobacterium ...
NP_962624   237 VALAVGLVFNRLMAVARPArp---mRTWTLIPALAGAGLVTGVCShWWPELPGNGRSILTVSLasg-------------- 299 Mycobacterium av...
Feature 1                                                                         #####         
AAD53928    296 -------------------------------------lsGMKAGELFCFKILAVFLALWa--GAYGGLLTPGISFGALLA 336 Zymomonas mobilis
NP_269483   321 -------------------------------------phLSYISWLLVAKAVAISLVFAs--GAKGGKIAPSMMLGGASG 361 Streptococcus py...
NP_688188   297 -------------------------------------ttVSLIAILVVLKMIATLSTLYa--GAYGGILTPSFSIGACLG 337 Streptococcus ag...
BAB97456    291 -------------------------------------liLSTILLVLVLRTAMFLLAFRv--GMVGGNLIPAFALGSMVG 331 Corynebacterium ...
ZP_00732099 297 -------------------------------------inWSESLQLMALKWLAVLFALAa--GAYGGLITPSMMLGSTFA 337 Actinobacillus s...
CAH13013    307 -------------------------------------vgIGLSIILFMLRNVFVWSSLRv--GAQGGLLTPSLANGALLG 347 Legionella pneum...
ZP_01164005 299 -----------------------------------nsqvLGALLFGLVAKVVVTLFTIKc--GGYGGTLTPSIAAGAVIG 341 Lactobacillus re...
AAT89587    283 -------------------------------------lpVLLLLAIALVKTVATVGTIGa--GAAGGTLTPSLAIGAGLG 323 Leifsonia xyli s...
AAT81840    297 -------------------------------------vaPASLVILLVGKILATTVALRs--GAAGGLLTPSLSAGALVG 337 Propionibacteriu...
ZP_00420501 325 -------------------------------------ltVGLAATLLVLKVLIEAGSLRa--GAEGGLLTPGLANGALLG 365 Burkholderia vie...
AAY29669    314 ssaaaspwnllagggnvsgsastavnagfqlsqsniamlLGVLALTFVAKALVTLMTIRs--GASGGVLQPGIALGSTLG 391 Bifidobacterium ...
NP_696122   299 --------------------------------------fIPETAGTAGAMQSASSAAASpwnLLTGGGNVSGSASGGGAG 340 Bifidobacterium ...
NP_962624   300 -------------------------------------mtLASALAILLLKPVLTALFLRa--GGAGGLLTPSLATGAAAG 340 Mycobacterium av...
Feature 1                                                                                       
AAD53928    337 VVIGHLwnmwl-ppvpiGAFAIIGGAAFLASSm------KMPITAMALVIEFARt----GHDFLIPIAFAVAGSIAISQF 405 Zymomonas mobilis
NP_269483   362 LLLAILsqyliplslsnTLAIMVGATIFLGVIn------KIPLAAPVFLVEITGq----SLLMIIPLALANLIFYFSYQF 431 Streptococcus py...
NP_688188   338 FLLASIsipll-phisiVTSMLVGAAIFLAITm------RAPLTAVGLVISFTGq----SVITIVPLTIAVLFATAYDYF 406 Streptococcus ag...
BAB97456    332 GVVGAVlepit--nvpiAAFALLGAAAFLSTTm------AAPLFGLIAAVEFTDm----EAQGYLPIFLAVASAVLAVRV 399 Corynebacterium ...
ZP_00732099 338 YSLAIGwnalf-pqlslEGAAIIGACVFLGIMq------KMPFTSIVFLLELTRs----NAEVLMPLTLAMGAAIATDRL 406 Actinobacillus s...
CAH13013    348 AILGGIwnlyl-ppapiHAFALIGATAFLAAAq------KMPLTAIILIFEFTRi----NFIFLIPIMLAVSGSIAMCQL 416 Legionella pneum...
ZP_01164005 342 VFLGIPymhff-pivtlTQCAVIGASLFLAASq------QAPLMALFMLFEVCHl----NFTAFLPLGIGVAISIGISKW 410 Lactobacillus re...
AAT89587    324 LGLGAVwdalw-pgaplAGFALIGAAAFLAATm------RAPVTALLLVMEFTHq----GPQLLTPVMLCVAGAVAVGYV 392 Leifsonia xyli s...
AAT81840    338 ALVAVVagida--psqiAMMVIVGAGCVLSMTq------RAPLFAAAFALELTRagalgIPVVVAAVMLGWTGFVLVSRR 409 Propionibacteriu...
ZP_00420501 366 VVLGGLwsavw-pgasvGGCALVGATAFLAASm------QMPITAVVLLLEFTRa----NHDSLVPMLLAVAGSLTAYRF 434 Burkholderia vie...
AAY29669    392 AMLGLIwillf-padsvTACALIGAAALLSASq------QAPLMAMCLVMELTEa----PSAFFVPVGLAVAASSLVPKW 460 Bifidobacterium ...
NP_696122   341 SGMASF-----------WAMLQGGSGPSGSVMnagfplsQSNIWMLLGVLALTFva--kALVTLMTIRSGASGGVLQPGI 407 Bifidobacterium ...
NP_962624   341 AALVLTinwatasqlhvPAVSLAGAAGVLAVTq------GSPIWAAIFVWELAR-----PPLWLFLLFLLTATAAHGLKV 409 Mycobacterium av...
Feature 1       #  
AAD53928    406 YDQ 408 Zymomonas mobilis
NP_269483   432 YRF 434 Streptococcus pyogenes M1 GAS
NP_688188   407 IRK 409 Streptococcus agalactiae 2603V/R
BAB97456    400 WSV 402 Corynebacterium glutamicum ATCC 13032
ZP_00732099 407 IAK 409 Actinobacillus succinogenes 130Z
CAH13013    417 TKN 419 Legionella pneumophila str. Paris
ZP_01164005 411 MQE 413 Lactobacillus reuteri JCM 1112
AAT89587    393 WER 395 Leifsonia xyli subsp. xyli str. CTCB07
AAT81840    410 GLG 412 Propionibacterium acnes KPA171202
ZP_00420501 435 AQQ 437 Burkholderia vietnamiensis G4
AAY29669    461 MLS 463 Bifidobacterium breve
NP_696122   408 ALG 410 Bifidobacterium longum NCC2705
NP_962624   410 LAQ 412 Mycobacterium avium subsp. paratuberculosis K-10

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