1U69,1U6L,3L20,1U7I,1TSJ,3OMS


Conserved Protein Domain Family
PhnB_like

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cd06588: PhnB_like 
Click on image for an interactive view with Cn3D
Escherichia coli PhnB and similar proteins
The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.
Statistics
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PSSM-Id: 319899
Aligned: 57 rows
Threshold Bit Score: 94.2608
Created: 8-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1U7I_A; dimer interface of phn-like protein from Pseudomonas aeruginosa, defined by 4A distance.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ######                   #                                   ##  #              
1U69_A      7 NTICLWYd----SAALEAATFYAETFpDSAVLAVHrapgdyp----sgkegdvLTVEFRVXGIPCLGLNGgpafr---hs 75  Pseudomonas aerugi...
1U7I_A      7 VRPFLXFq---gVQAEAAXNFYLSLFdDAEILQIQrygaegp-----gpegsvLKALFRLGDQSVHCIDShvrhaf-dft 77  Pseudomonas aerugi...
1TSJ_A      6 ITTFLXFn----NQAEEAVKLYTSLFeDSEIITXAkygengp-----gdpgtvQHSIFTLNGQVFXAIDAnsgt-----e 71  Staphylococcus aur...
Q837B9      4 FSPCLWFn----TQAEEAANFYTTIFeKGAILSKTnyvneeh----qpqgtslMTIEFTLANQTIIGLNGgpefs---ft 72  Enterococcus faecalis
NP_814662 135 IVPTFMFanekyGEAAKALSEWLAIFgPGEIIEKVeyed-----------gniAQALFTLQEQPFRVMDArdkhdf-dft 202 Enterococcus faeca...
NP_464344   4 AVPYLVFn----GEGQDALTFYADVF-QAKITSVQrfkemnnfdgdavfgerlMHSRLAKNGEEFIYITDapydgf-tig 77  Listeria monocytog...
Q72NQ2      4 ITPFLMFd----NNLGEALKLYASTFsDWKLLSQNqtg------------dvvMSATFAISGKEILSFNGgphfk---ft 64  Leptospira interro...
CAL28539    3 LSPYIIV-----NDVKKAADFYNSIF-GGEIIILNqqk------------dkiLHAEVQINESTVIHLSSnygkp--fsn 62  Staphylococcus car...
NP_600303   5 ISTYIAFn----GNTTEALKHWQEVF-GGELNLLTygqltlegmpfdppadalAHGVLTLDNGGLISGSDsfegemlvkd 79  Corynebacterium gl...
NP_765891   4 VSPFIYV-----KDVDKSLCYYKDVF-NAQTEILMgkd------------grtYHAQLIIGDETFVHFSDtfhkh--pvs 63  Staphylococcus epi...
Feature 1       ###### #   #                             #         #  
1U69_A     76 eaFSFQVATDDqaETDRLWNAIVDNGgEESAc----------GWCRDKWGISWQIT 121 Pseudomonas aeruginosa
1U7I_A     78 paFSFFVDCESnaQIERLAEALSDGG-KALXplgdygfsqrfAWLADRFGVSWQLN 132 Pseudomonas aeruginosa PAO1
1TSJ_A     72 lpISLFVTVKDtiEXERLFNGLKDEG-AILXpktnxppyrefAWVQDKFGVSFQLA 126 Staphylococcus aureus subsp. aureus
Q837B9     73 paSSFFVECTTlpQTETLWKNLTADG-QILMpfgeypfsplyGWVVDKFGVSWQVS 127 Enterococcus faecalis
NP_814662 203 maFSIYIDCENqeEIDRLWQQVTAKG-KEWPc----------GWMEDQFGVSWQTG 247 Enterococcus faecalis V583
NP_464344  78 nrVTILINFETedDIKYAYEVLSATG-KVEMelqvafwgstyAQVTDRFGVFWQLN 132 Listeria monocytogenes EGD-e
Q72NQ2     65 paISFFLSCQTskEIEKIWASLSQEG-IVLMelqeypfsekfGWVQDKFGVSWQVC 119 Leptospira interrogans serovar Copenhageni
CAL28539   63 dnVNLILTFDNleEEQRVYHALSDNG-DPHMplaktffnsmhGQVKDQFGINWLMN 117 Staphylococcus carnosus subsp. carnosus TM300
NP_600303  80 taYSMLYNAESveDGRARIDKIVAAGgEEAMkfeqapwggffGQVFDKFGVMWNIS 135 Corynebacterium glutamicum ATCC 13032
NP_765891  64 knPHLIIECDSleELERVYKRLIDDGgHAKVklnktffnayhAEVKDRLNGIIWVF 119 Staphylococcus epidermidis ATCC 12228

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