1AM4,1F7C,1PBW,1TX4,1XA6


Conserved Protein Domain Family
RhoGAP

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cd00159: RhoGAP 
Click on image for an interactive view with Cn3D
RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Links
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Statistics
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PSSM-Id: 238090
Aligned: 180 rows
Threshold Bit Score: 65.4009
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
GTPasecatalytic
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:GTPase interaction site
Evidence:
  • Structure:1AM4_A/D; human RhoGAP, contacts with Cdc42Hs at 3.5 A.
  • Citation:PMID 9262406
  • Structure:1TX4_A/B; human RhoGAPcontacts with Rho at 3.5 A.
  • Citation:PMID 9338791

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #                                      #   #              
1AM4_A     28 PIVLRETVAYLqahALTTEGIFRRSANTqv--vREVQQKYnmglpvdfdqyneLHLPAVILKTFLReLPEPLLTfDLYPH 105 human
XP_650102 195 PLPILKAMYSLyfsRRSLEGVFRISTDVnv--iDNYMDFIgiidt----qtitNVDIANVIRKFFNtLNFPIWPkELLPS 268 Entamoeba histolyt...
XP_651589 205 PKMIEIMILLIlenGMDFKGIFRFSPFAnlkeiEEGTRRIsvtdi----seysVDIIACLLKCFLQkMPIHIIDtMKSLE 280 Entamoeba histolyt...
XP_651930 237 PLGLEKALKYLflnGLNKEGLFRLSSTPdk--lNFAKMKFlatny----shedPYLVANLVKLFIKeIPGNLIPkNAIAV 310 Entamoeba histolyt...
XP_653135 197 PLPILKAMYGIyftPRSLEGVFRQCADSka--lESYTKLIgvidv----qatdVVNLSGVIRKFLRsLNTPIWPqRLLQP 270 Entamoeba histolyt...
XP_655219 194 PVGINRIMTELyysKNDKSTLFRLSSDTeq--iNKYYESIrsldy----knldNTTLSSLLKKFIRnLKSPIWPeEFLQP 267 Entamoeba histolyt...
XP_656032 196 PIALEQIIKEIk-eRGIVQGIFRECGKVse--iEEIINRMsvtnf----kllePKELSSLLKRFVRdIPGGLIDiEIQNS 268 Entamoeba histolyt...
XP_656709 183 PEYFEKIMYKLy-yEKELEGAFRQCAGVte--mVEYVKYIgiidf----qltdYILLSAIVKKYLReTTEPVWPqSQFDQ 255 Entamoeba histolyt...
XP_657498 415 PNQIESIFLYIinsCCEKEFIMNKANSQekdyaKEVLLRMdqidf----eglpPNVVCECLKMFLKqLPNSLINsELTNT 490 Entamoeba histolyt...
XP_657582 228 PSGIENIIENIkanGYTTEGIFRLSPSEkd--iRDVYDRLgvidf----egldYILMAAVLKRFFRnLPEKVFNrINTNK 301 Entamoeba histolyt...
Feature 1                                                                          #  ##      
1AM4_A    106 VVGflni---------------desqRVPATLQVLq-tLPEENYQVLRFLTAFLVQISAhsdqNKMTNtNLAVVFGPNLL 169 human
XP_650102 269 LLNctkene------------nnssiWIDNVRQLGs-qIPKFNSLLLKHLLALCGKIAQts-sSKMDEyNLAVCIAISTL 334 Entamoeba histolyt...
XP_651589 281 MISiflknk-----------teptelKRELYKKIIf-tLPDANITLLMNLCYLCNEINKkkelNGMSSkNLGVVLAPSIL 348 Entamoeba histolyt...
XP_651930 311 FQKwdneivagintetreidpvlekkIALQIHSDIaltLPPEHLTCLKYLVSFCSHLVKse-kSKMTIeAISTCVAPNVF 389 Entamoeba histolyt...
XP_653135 271 MLSitmsns------------tneevWVDKIRELTc-qLPKTNASILKHLLALCGRITNcp-eSKMDNyNIAVCLGLSTF 336 Entamoeba histolyt...
XP_655219 268 LVScmdsq--------------nkmsLIASIHGMIn-kLPPSNKAFLKKLVFLCNEVIHsk-dSKMTAqSIAVCLAPGLM 331 Entamoeba histolyt...
XP_656032 269 LLEiwgmkd------------iqksaRVKQVFLLLk-sLPEENYTLLHKIMELNFDIQLeqktTLMNAtNLSICWTPVLF 335 Entamoeba histolyt...
XP_656709 256 LMFitgqya------------sspiqWKMKFRSVYq-sVPSENKVFIESLIALCIKIINnp-tSKMNIqNMSICIAPGFI 321 Entamoeba histolyt...
XP_657498 491 IIQqwnnlgq----------pneystHNKPVRQMIn-sCSKESITLLTALLKVCCKIESlsdvNKMNEqSLADNLYSCIF 559 Entamoeba histolyt...
XP_657582 302 ALSinki----------------kayNIGTLKSFIk-gLPKNNIMIIKQLFGLLYKINTysdtNKMNAqNLATIWIPCLF 364 Entamoeba histolyt...
Feature 1                               #         
1AM4_A    170 wakdaa-----------itlkaINPINTFTKFLLDH 194 human
XP_650102 335 vekddv----------qtaakeIKTLIKAFEMMIKN 360 Entamoeba histolytica HM-1:IMSS
XP_651589 349 tlpdpeflan--snidpntgkeVGYGIDILTFLIDE 382 Entamoeba histolytica HM-1:IMSS
XP_651930 390 ysdpkle--------gptllnySKQINRLFSFILRN 417 Entamoeba histolytica HM-1:IMSS
XP_653135 337 vskndi----------qtigpqTGYIIKTFELMIKN 362 Entamoeba histolytica HM-1:IMSS
XP_655219 332 rkndmtc---------asiaaiTPTLNNALALIIEN 358 Entamoeba histolytica HM-1:IMSS
XP_656032 336 dmtt--------------flmkMKEANEIVEVMILG 357 Entamoeba histolytica HM-1:IMSS
XP_656709 322 rksain----------dltqssHQLVFIAFSNMLTY 347 Entamoeba histolytica HM-1:IMSS
XP_657498 560 sinslsikpikseqiqieqlkkESTLKEIIVFLIKE 595 Entamoeba histolytica HM-1:IMSS
XP_657582 365 eipqesp---------vvfscrLNELKTFFVALIDN 391 Entamoeba histolytica HM-1:IMSS

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