3D02


Conserved Protein Domain Family
PBP1_LsrB_Quorum_Sensing-like

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cd20002: PBP1_LsrB_Quorum_Sensing-like 
ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein
Ligand-binding protein LsrB-like of a transport system, similar to periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.
Statistics
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PSSM-Id: 380657
Aligned: 14 rows
Threshold Bit Score: 426.734
Created: 15-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on Salmonella typhimurium LsrB binds R-ThmF (autoinducer-2)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #     ##                                                                  
3D02_A      6 TVVNISKvdgxpWFNRXGEGVVQAGKe-fNLNASQVGpsstdaPQQVKIIEDLIArKVDAITIVPNDANVLEPVFKKARD 84  Klebsiella pneumon...
AOH42369   30 EIIFVPKligipWFTTMEKGFVDYGEkdgTLNVTTMGatdadpAAQARMLEDAIAkSPDAIVVVPNDTATLEPLLRKGKE 109 Anaerolineaceae ba...
AJY47318   36 TMVAIPKlr-spWFNRFEVGVKKAGKd-fGVDAYQQApesadeALQVRLINDAVNqGIDGLLVVPNDANSLVPAFKRAQA 113 Martelella endophy...
EOS67884   45 EIAVVVKvvgidYFSVFEKGVEKFAEe-hDVNAYVTGpstadaAEQVNIIEDLINsGVDAICVVPNDATVLESVLQSAKD 123 Lachnospiraceae ba...
SKA68848   31 TFAGVGKvn-tpWFVRHKQGVMLGAEe-nNVKGVYKAapiashKKQAEIVNDFIKdGVNALLVVPNDAQSLEKAFLAAKK 108 Succinivibrio dext...
EPF32245   29 TMVTIPKlk-saWFEPYDADARKAGKe-fNTEVYMQApaaadeAQQVRIIEDAINqGVNAVLVVPNDANSCIPAFKRARE 106 Treponema maltophi...
NP_437006  29 KVGVVVKiggipWFNAMEAGIKERGEk-lGVDAFMVGptsadpALQVRAIEDLIAqNVKVIGVVPNDAKVLEPVLTKARE 107 Sinorhizobium meli...
OQY52022   35 EIVTIVKitgipWFNRLEEGVKQAGKe-lGIKSYQVGpadadpAQQVRMVEDSIIkGVDAICITPNDAKALEPAFAKAKE 113 Desulfobacteraceae...
OGO68262   35 EIATVVKitgipWFNRMEEGVKRAASe-lGVNAYQTGpadadpAQQVKVIEDLIAkGVDAIAVVPNDAKSLEPVFAKAKE 113 Chloroflexi bacter...
KQV14338   31 KLVVVHKnagipAVNQMADGVVNAGKe-fGIDAKLIGpatqdaAQQVKLIEDVIAqGVEAIGVVPIDEKVTAAVLKRAQG 109 Rhizobium sp. Root...
Feature 1             #            #                                   ##  #                  
3D02_A     85 aGIVVLTNEspgqpsanwDVEIIDNEKFAAEYVEHXAkr-xgGKGGYVIYVGsltvpQHNLWADLLVKYqkehypdxhEV 163 Klebsiella pneumon...
AOH42369  110 aGILMITQEaptvknadlDIEFLLLDQEGKDVIELLAkn-mgTEGGYAIMVGgltveGHNNRADAMVKYqeekypdmyQV 188 Anaerolineaceae ba...
AJY47318  114 qGIPVITHEspqqpdadfDIEMIDNLAFGAKAMDLLAsaigpDGGKIAIFVGsltvpAHQIWSKGALDRaaeaypnivQL 193 Martelella endophy...
EOS67884  124 kGIVVVTTEspgqvgadyDVEMIINDAFAELIAEDAAka-cgGSGEYALYVGsltvpLHNAWADHVEEYlaekypdmkLC 202 Lachnospiraceae ba...
SKA68848  109 nGITVITHEspkqvnadfDVELIDNEKFGILLMDEFVklskgKKGTYAIYVGsltvpSHNLWAQAAIKHqket-ypqlEL 187 Succinivibrio dext...
EPF32245  107 kGIVVLTHEspnqpeadfDIEMIDNVKFGERMLEEMVki-sgTSGKYAIYVGsltvpAHNIWADAAITLakkkypnliMV 185 Treponema maltophi...
NP_437006 108 kGIIVITHEspsqkgadwDFELASATGFGEAHAKLLAek-mgGKGEYAVFVGsltvpLHNAWADAAIEYikknhpemtLV 186 Sinorhizobium meli...
OQY52022  114 kGIAVITHEspdqkgkdyDVELIDNIKFGQHFWDMLVky-mgDNGEYAIFVGsltvpLHNLWADVGLEYaktkypnlkLV 192 Desulfobacteraceae...
OGO68262  114 kGILIITHEspdqvgndyDLELIDNIEFGRHHMDELVkc-mgEEGEFAIIVGsltvpLHNLWADVALEYgaekypgmkLV 192 Chloroflexi bacter...
KQV14338  110 aGIKVVTFEgpnqegrdwNVDLVGTLNFGEVQMQRLAke-mgEKGEYVIFVGalttpSHMQWADAAVAYqkknypnmkQV 188 Rhizobium sp. Root...
Feature 1                                     ###                       #                   ##
3D02_A    164 TRRXPVAESvDDSRRTTLDLXKTYPDLKAVVSFGSNGPIGAGRAVKEKraknkVAVYGXXIPsqaASLIKSGDITEGITY 243 Klebsiella pneumon...
AOH42369  189 TTRVEGGENvQVAHDKLLELSTAYPDMKGLITIGSLGGIGASQAVREKnligkFYVIGCTTPseaKAYLEDKSMAANYIG 268 Anaerolineaceae ba...
AJY47318  194 GDRYPVSEDqAQSRQTALDIITANPDIKGFLCFGSQGAPGAAQAIEERglsgkVAAVGTTSPqqaAQYVKRGSMTGSVLW 273 Martelella endophy...
EOS67884  203 TDRIACGEDsALARETTLDLLKTYSDLNCFICFGSQGPIGAAEALTEEdmigkATVVGNIIPsegAAHLESGAITTGYLW 282 Lachnospiraceae ba...
SKA68848  188 IDILPISENrGVSGKTALSLIKKHPDLVGIISLGSEGAPGIGKSLQHKklkdaITVVGVATPndtKEYLKEDYVQELILW 267 Succinivibrio dext...
EPF32245  186 DSKFPVSEDrNAARQKTLELLTVYPDLKAILAFGSQGAPGAGQAIREKglndkICVIGTTSPleiAPFLKDGSVDMAVLW 265 Treponema maltophi...
NP_437006 187 GDRYGVAEDvDKSRSTALDLISAHPDLKGFLAFGSQGPIGAGRAIEERrkvgeIFVLGPFSPgqgQKLIKSDAISGGFMW 266 Sinorhizobium meli...
OQY52022  193 TQRIPCGEDqALSKQTMLELLKTYPNIKGIIGFGSLGPPGAAQALKEKglagkISVVGTVLPnhaAPYLREGSMQHGILW 272 Desulfobacteraceae...
OGO68262  193 TDRIPSGEDqELSRQKTLELLQAYPNLKGIMGYGSLGPPGAAQALQEKglidkVCVVGTVLPghaAPYLKDGSLDHGILW 272 Chloroflexi bacter...
KQV14338  189 ADRFPGGDEvDVAQRTTLDILKAYPNVTGILAEGSAGPIGAGNALRQTrmqkkVAIVGTCVAsqaQAMLKNGTIRECMLW 268 Rhizobium sp. Root...
Feature 1                                                               
3D02_A    244 DPATAGYALAAVASTllngk-tiepGFELkeLGKAEvdsdkHIIRFHkVLLVNKDNID 300 Klebsiella pneumoniae subsp. pneumoniae ...
AOH42369  269 NPYRIGLDSAYIVEQilqg---kklEELTelPEYGEpmiedGIITFHaDSEVTVENAD 323 Anaerolineaceae bacterium oral taxon 439
AJY47318  274 DPAEAAYGMVFIAKTilegnkdqitADFDipTLGKPakldgNTLIYDrPLVVTADNID 331 Martelella endophytica
EOS67884  283 NPADSGYASCYIAEEllkg---nkiDSSFsiPDMGDvaiedTTLWIDnPITITADNWK 337 Lachnospiraceae bacterium 3-2
SKA68848  268 DPAQAARVQTILAKMiadgr-rdeiKPGFslSEFGAprfdgNTLIFDdPLIVTKDNVD 324 Succinivibrio dextrinosolvens DSM 3072
EPF32245  266 SSGDASYAMVYIAKMildgk-raeiKNGLeiPGLGTpvikgMNILFNnPLIVDKNNCD 322 Treponema maltophilum ATCC 51939
NP_437006 267 NPKQAGEVFVTLAAKlmkge-eikdGEEIegLGVIHpdfenRNIIVDqLVPINKETVA 323 Sinorhizobium meliloti 1021
OQY52022  273 DPKDAGFAMTWIAKQvveg---kniTQGMtiPGLGKislegDVIKVNaVIDITKENVD 327 Desulfobacteraceae bacterium 4572_89
OGO68262  273 DPGDAGFAMTWLAKYvldg---gkvTDGMeiPGLGKislkaNVLTVDgMIDITKDNAE 327 Chloroflexi bacterium RBG_19FT_COMBO_56_12
KQV14338  269 DPVVSGYSVVAVAKLlldga-tftdGMQIgsLGKATidptkKSIQFNkILHITSENVD 325 Rhizobium sp. Root1203

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