1PC6


Conserved Protein Domain Family
NinB

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pfam05772: NinB 
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NinB protein
The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.
Statistics
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PSSM-Id: 428623
Aligned: 12 rows
Threshold Bit Score: 144.05
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1PC6_A               5 TFEIRSPAHQQNAIHAV---QQILPDPTKPIVVTIQERNRSL---DQNRKLWACLGDVSRQVEW----HGRWLDAESWKC 74 
hku:LHK_01507        6 FYIPKPAAVREQMTRAY---RTACELADSGEALEVTVRTRSLrsaQANALMWVRLGELEEQTDW----HGIRLTAEEWKD 78 
zhongguo:PT7_P074    5 VFNLVSPLVRRNAAHAI---ANVP----DGYRCELRPRTRTL---DQNSLLWSCLNDLARQVEWpingKQERLSPHDWKD 74 
WP_011871693         4 HFVLRDNHIKQRAQHAI---LQAP----EGYVCTIKPATRSL---EQNALLWPLLQTLSKNVDW----YGNKLTDEEWKD 69  Herminiim...
WP_002440512         4 QYTLINDAIKRNAIAHI---QSLPVDSRSPLIVEAREETRTE---KQNRLMWPLLKDLSEQVVW----YGEKLEREQWKD 73  Shimwelli...
Q0WF67               1 --mLCGDQYKRNAIQFI---SQLPVNPDKPLLITIQERTRTL---DQNARLWATLGDIAKQVVW----HGQKLSSEDWKH 68  Yersinia ...
Q38662               5 TFEIRSPAHQQNAIHAV---QQILPDPTKPIVVTIQERNRSL---DQNRKLWACLGDVSRQVNW----HGRWLDAESWKC 74  Salmonell...
Q32DW5               4 TIFLRTKQQQQAAINAI---LSTPLDKDKPVTIRITDYKRNL---DQNAKFHAMLADIARQVQW----CGKWLKPEQWKV 73  Shigella ...
REF_pohc:D11S_2250  30 PFFLRDQRIKNNCLDLI---KELPTDDKKPLVVKIQPMTRNL---EQNAKLHAMLSDISNQCEF----GGEKRDINTWKM 99 
ACL32274            13 KYFLRTEQIKNNALEFV---KALPIDEKKPLVVDVKPATRNL---KQNAKFHAMCVDIARQVQF----NGEWLPLEAWKV 82 
jgi:Daci_3226        6 TLSLWEESQAHKAINHLwknARVAVRQGRRMVAELRPEKRSD---AQNAMLHALLTEIAKTREW----AGAKRDVETWKR 78 
WP_011705906         6 KYILRSPEIRSRACQMV---AGLPVDQDKPLVIEVKEMTRSL---AQNSMLWACLTDIAEQVNW----HGRKLAKEDWKH 75  Aeromonas...
1PC6_A              75 VFTAALKQ------QDVVPNLAGnGFVVIGQSTSRMRVGEFAELLELIQAFGT 121
hku:LHK_01507       79 LLSAGLVV------SKVVPNIDGtGFVIVGQRTSKMSVKQMNDLIALIEAFGS 125
zhongguo:PT7_P074   75 IMTASLWQe-----NRVAMGVRG-GFVMLGRRTSTMSVRAMTELVDFIHAFGD 121
WP_011871693        70 VLTASLKK------QKAVPGIDG-GFVVCGQRTSTMSKADFSELVELIYAFGA 115 Herminiimonas arsenicoxydans
WP_002440512        74 LITVLVNQtqkgesQKSAPGIGG-GRVYFGVRTSKSSKRYLCDVIEAIYWFGT 125 Shimwellia blattae
Q0WF67              69 IFTASLKG------QRSAPGLEG-GFVVLGQSTSRMTVGELRDLIELINAFGA 114 Yersinia pestis
Q38662              75 VFTAALKQ------QDVVPNLAGhGFVVIGQSTSRMRVSEFAELLELIQAFGT 121 Salmonella virus P22
Q32DW5              74 LLISGHAVatk-qeADVLPGLEG-ECVNIRESSAQMSVKRMASLIEYTTAWAI 124 Shigella dysenteriae Sd197
REF_pohc:D11S_2250 100 IFCSAHRIatg-dkAEMAIGLEG-EVINLRESTAQMSVKRMASLIEYVTAWGV 150
ACL32274            83 LLISAHAEatk-egSCLVTGLEG-ELVNIRESTAQMSVKRMASLIEYATSWGV 133
jgi:Daci_3226       79 LLTAAWLRarg-esVEVLPALDGcGIDVVFRRTSSLTRAECGELVDFIEAWRA 130
WP_011705906        76 VLSAALYQ------QDVVPNIDGtGFVVLGKSTSKMTVREMRDLIELAHAFGA 122 Aeromonas hydrophila
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