Conserved Protein Domain Family
TraH-like
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cd16895: TraH-like 
conjugal transfer protein H and similar proteins
This subfamily consists of several TraH proteins, putative conjugal transfer proteins of uncharacterized function, apparently found only in alphaproteobacteria. They have similarity to lysozyme and preserve the critical glutamate residue which has catalytic activity in lysozyme-like proteins.
Links
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Statistics
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PSSM-Id: 381616
Aligned: 10 rows
Threshold Bit Score: 327.76
Created: 25-Jun-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Feature 1: putative catalytic residue [active site], 1 residue position
Conserved feature residue pattern:EClick to see conserved feature residue pattern help
Evidence:
  • Comment:residue involved in cleavage of beta-1,4-glycosidic bond in lysozyme like proteins
  • Citation:PMID 7548026
  • Comment:partially conserved glutamate residue, which is a key catalytic residue in lysozyme-like proteins
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                               #                                                        
CZT37586       1 MDAAFIAECADPsLKPAIVEHFVAAVGPGDPLAVTVKaGGRLILVPKPKTPDEAMeIIRQYVGQaVVRVGLTQFPAGVGV 80  Rhizobium sp. 9140
Q7D2G0         2 VDSALIKECSDPgLKPAIVEQFIERAGAPDPLAVTVRsGNRIVLVPRPTTPDEALaLIRQNLGRnIVRVGLTQYPAGLGI 81  Agrobacterium f...
ACM39322       3 IDAALIQQCADPrLSVETVQTFVEEVGATDHLTVTVKsGDRTYAVPRPKTAEEAMaLAREYIGQaVVRVGLTQYPAGLGA 82  Agrobacterium v...
WP_054159321   1 MDLAFIQSCSDPaLKPAIIQRFLDEVGSPKPLAVTVNmSGKAVLLPEPRSVDEAMaTIQHYAGQaIVRVGVTQMPAGIGV 80  Rhizobium sp. A...
Q1QF76         2 VDAAGIHHCADPvLKPAIVEKFIRAVGSPDPLTVTIRaGNRVVLVSPPKTPDQAMaLVRRYVGHaMVRVGVTQYPAGLGV 81  Nitrobacter ham...
Q2K2P4         2 LDAALIQQCADPsLKPAIVEQFVTAAGANDPFAVTVKsGGRLILVPKATTQDEAMaIIRQYVGQtVVRVGLTQFPAGVGV 81  Rhizobium etli ...
WP_062602762   2 FDAALIEKCSDPtLKPAIVEKFIAQAGSPDPLSVTVKaGDRLILVPASKTEREAMeLVKRFAGKaVVRVGVTQFPVGIGV 81  Rhizobium sp. L...
WP_065376473   2 LEAALIEKCADPsLDVHMVEEFVRAVGNGDPLAVTVKvGQKKILVEKAATPEEALaIARRYVGHaSVRVGMTSYPAHLGI 81  Ensifer adhaerens
WP_062492152   2 IDAALIEQCADPsLTPAIVEEFIAAAGSEDPLNVTVRaGSKTFLVPKVKSPEEAMkLVQDHLGKaVVRVGLTQYPVGIGV 81  Labrenzia
WP_006470244   2 IDPELIQICADPrLNVEIVQQFVAEMNAADHLTVQVAqGDRTILIPKPETVEQAIaTTQEWVGKaTVRVGLTQYPAGLGI 81  Ochrobactrum in...

Feature 1                                                                                        
CZT37586      81 KDaseLKPDLMEPCENLRMGTKMFSKIMRIVSQWYGNPtskevlPQIFEDAVYAWNTGQFEGQSVFQAQDPGGTIvdrke 160 Rhizobium sp. 9140
Q7D2G0        82 VEagqLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPtesevlPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKlpepd 161 Agrobacterium f...
ACM39322      83 VDksqLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNPr-----SEAFDDALWSYGTGVFEGERIFYAEDPGDVKlaepk 157 Agrobacterium v...
WP_054159321  81 KEigdLDPALLDPCENLRIGTGLFAKIIRIVTKWYGNPqgeeglPQVFDDAVYAWRTGEFEGVSVFQAQDPVPVNevpmk 160 Rhizobium sp. A...
Q1QF76        82 SDvseLKPDLVDACANIRMGTTLFGKVYRIVVKWYGTPa-----DQAFGDAIEAWKTGYFDGKYVFDEPDPGSLPprkga 156 Nitrobacter ham...
Q2K2P4        82 KDaadLNSDLVDPCENLRKGTAMFAKVLRIVAKWYGNPksddvfPQIFDDAVYAWKSGEFEGVSVFQADDPGKSVtidnt 161 Rhizobium etli ...
WP_062602762  82 ADasdLKPELVDTCENIRMGSTLFAKVFRIVVKWYGSSp-----PEAFNDAIYSWKTGYFEGRAVFQAPDPGGDTnspsn 156 Rhizobium sp. L...
WP_065376473  82 KSgteLSPTLFDACENLRMGTVMFAKVMRIVTRWYGANaskealPYVLSDSLHAWVSGEFEGKDVFEAQDPGGPIaekqa 161 Ensifer adhaerens
WP_062492152  82 TDksqVTADVFDTCNNIKIGTALFARVYRVVTKWYGTPv-----QEAFEDAIEAYQTGYFDGEYVFTAKDPGESVdlaap 156 Labrenzia
WP_006470244  82 TDptaIGYELFDNCENLRMGTELFGKVLRVVTKWYGGPa-----EPAFDDAIHAYRTGWFEGERIFYAEDPGDVEvatpn 156 Ochrobactrum in...

Feature 1                                                        
CZT37586     161 vssdaadkpa-------danpsqsegepldekEVGTAGIRVDLSRIGG 201 Rhizobium sp. 9140
Q7D2G0       162 pgveaetseags---dkmkggnvdtaleaepaDPNKAGIRIDLSGIGA 206 Agrobacterium fabrum str. C58
ACM39322     158 atesqetgvssa----eatsdegpseppfkseDPNKASMRIDLSGIKA 201 Agrobacterium vitis S4
WP_054159321 161 eknldmlegs--------gaapqevtsdtepvSSEDAGMRINLSRLGG 200 Rhizobium sp. AAP43
Q1QF76       157 pgdsdqpvktdda-pkpatsadsgaqpakepdDPNKAGIRIDLTGIGV 203 Nitrobacter hamburgensis X14
Q2K2P4       162 lpanldkasad------ippadantesvekgeSVGSAEMRIDLSRIGG 203 Rhizobium etli CFN 42
WP_062602762 157 qgdvgdpeags-----tedversrnvregesdTMNNAGIRVDLSWING 199 Rhizobium sp. Leaf386
WP_065376473 162 vrphgtrns---------depslpsganvqpgDINSAGMRIDLSGIGL 200 Ensifer adhaerens
WP_062492152 157 dpaasvegapapeadnaspdprnelrqqlwaqDPNKADIGVDLSGIGD 204 Labrenzia
WP_006470244 157 asatqtgastggd--adatpdtvpseppsseqDPNSASMRIDLSGVSA 202 Ochrobactrum intermedium

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