1NMB,1NSC,3CYE,3SAL,7NN9,4H53


Conserved Protein Domain Family
Influenza_NA

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cd15483: Influenza_NA 
Click on image for an interactive view with Cn3D
Sialidase or neuraminidase (EC 3.2.1.18) of Influenza viruses A and B
Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates. Viral neuraminidases, such as this family from Influenza viruses A and B, play a vital role in pathogenesis. Influenza neuraminidase cleaves an alpha-ketosidic linkage between sialic acid and a neighboring sugar residue. During budding of virus particles from the infected cell, the sialidase helps to prevent the newly formed viral particles from aggregating. The viral sialidase cleaves terminal sialic acid from glycan structures on the infected cell surface, promoting virus release and the spread of virus to neighboring cells that are not yet infected. Also, sialidase modifies mucins in the respiratory tract and may improve access of the viral particle to its target cells. Sialidases have a six-bladed beta-propeller fold.
Statistics
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PSSM-Id: 271235
Aligned: 7 rows
Threshold Bit Score: 601.791
Created: 27-May-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 59 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:4H53: Influenza A virus neuraminidase contacts two neighboring molecules in the homotetramer, contacts at 4A
  • Comment:based on the structure of the biological assembly for 7NN9
  • Citation:PMID 7549872

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ##  # #  ## ##   ##            #         ## # ####        ###    
1NMB_N     84 EFNNLtKGLCTINSWHIYGKDNAVRIGED---SDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRDLI 160 Influenza A virus
1NSC_B      3 EWTYP-RLSCQGSTFQKALLISPHRFGEArgnSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHLI 81  Influenza B virus ...
3CYE_A      1 VILTGnSSLCPISGWAIYSKDNGIRIGSK---GDVFVIREPFISCSHLECRTFFLTQGALLNDKHSNGTVKDRSPYRTLM 77  Influenza A virus
3SAL_A      2 EFLNNtEPLCNVSGFAIVSKDNGIRIGSR---GHVFVIREPFVACGPTECRTFFLTQGALLNDKHSNNTVKDRSPYRALM 78  Influenza A virus ...
Q6XUD6     83 EYRNWsKPQCQITGFAPFSKDNSIRLSAG---GDIWVTREPYVSCDPGKCYQFALGQGTTLDNKHSNGTIHDRSPHRTLL 159 Influenza A virus ...
7NN9_A      2 DFNNLtKGLCTINSWHIYGKDNAVRIGED---SDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALI 78  Influenza A virus ...
4H53_A      2 EYRNWsKPQCQITGFAPFSKDNSIRLSAG---GDIWVTREPYVSCDPGKCYQFALGQGTTLDNKHSNDTVHDRIPHRTLL 78  Influenza A virus ...
Feature 1        #### ### # #    #                ###  # # # #   ### # #                      
1NMB_N    161 SWPLSSPPTVYnSRVECiGWSSTSCHDGRARMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCQnGVCP 240 Influenza A virus
1NSC_B     82 SVKLGKIPTVEnSIFHMaAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIgGDCY 161 Influenza B virus ...
3CYE_A     78 SCPVGEAPSPYnSRFESvAWSASACHDGMGWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESECACVnGSCF 157 Influenza A virus
3SAL_A     79 SVPLGSSPNAYqAKFESvAWSATACHDGKKWLAVGISGADDDAYAVIHYGGMPTDVVRSWRKQILRTQESSCVCMnGNCY 158 Influenza A virus ...
Q6XUD6    160 MNELGVPFHLGtKQVCA-AWSSSSCHDGKAWLHVCVTGDDRNATASFIYDGRLVDSIGSWSQNILRTQESECVCInGTCT 238 Influenza A virus ...
7NN9_A     79 SWPLSSPPTVYnSRVECiGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHnGVCP 158 Influenza A virus ...
4H53_A     79 MNELGVPFHLG-TRQVCiAWSSSSCHDGKAWLHVCITGDDKNATASFIYDGRLVDSIGSWSQNILRTQESECVCInGTCT 157 Influenza A virus ...
Feature 1                                                                                     
1NMB_N    241 VVFTDGSATGPAETRIYYFKEGKILKWEPLtgtakHIEECSCYGEq-AGVTCTCRDNWQGSNRPVIQIDPvaMTHTSQYI 319 Influenza A virus
1NSC_B    162 LMITDGSASGISKCRFLKIREGRIIKEIFPtgrveHTEECTCGFAsnKTIECACRDNSYTAKRPFVKLNVetDTAEIRLM 241 Influenza B virus ...
3CYE_A    158 TIMTDGPSNGQASYKILKIEKGKVTKSIELnapnyHYEECSCYPDt-GKVMCVCRDNWHGSNRPWVSFDQn-LDYQIGYI 235 Influenza A virus
3SAL_A    159 WVMTDGPANSQASYKIFKSHEGMVTNEREVsfqggHIEECSCYPNl-GKVECVCRDNWNGMNRPILIFDEd-LDYEVGYL 236 Influenza A virus ...
Q6XUD6    239 VVMTDGSASGRADTRILFIKEGKIVHIGPLsgsaqHIEECSCYPRy-PDVRCICRDNWKGSNRPVIDINMedYSIDSSYV 317 Influenza A virus ...
7NN9_A    159 VVFTDGSATGPAETRIYYFKEGKILKWEPLagtakHIEECSCYGEr-AEITCTCRDNWQGSNRPVIRIDPvaMTHTSQYI 237 Influenza A virus ...
4H53_A    158 VVMTDGSASGRADTRILFIEEGKIVHISPLsgsaqHIEECSCYPRy-PGVRCICRDNWKGSNRPVVDINMedYSIDSSYV 236 Influenza A virus ...
Feature 1                                                                                     
1NMB_N    320 CSPVLTDNPRPNDpt-vGKCNDPYpg--nnNNGVKGFSYLDg----gNTWLGRTISIASRSGYEMLKVPnalt-ddrsKP 391 Influenza A virus
1NSC_B    242 CTETYLDTPRPDDgsitGPCESNGdk---gRGGIKGGFVHQrmaskiGRWYSRTMSKTERMGMELYVRYdgdpwtdsdAL 318 Influenza B virus ...
3CYE_A    236 CSGVFGDNPRPNDg--tGSCGPVSsn---gANGIKGFSFRYd----nGVWIGRTKSTSSRSGFEMIWDPngwt-etdsSF 305 Influenza A virus
3SAL_A    237 CAGIPTDTPRVQDssftGSCTNAVggsgtnNYGVKGFGFRQg----nSVWAGRTVSISSRSGFEILLIEdgwi-rtskTI 311 Influenza A virus ...
Q6XUD6    318 CSGLVGDTPRNDDsssnSNCRDPNne--rgNPGVKGWAFDNg----dDVWMGRTISKDLRSGYETFKVIggwstpnskSQ 391 Influenza A virus ...
7NN9_A    238 CSPVLTDNPRPNDpt-vGKCNDPYpg--nnNNGVKGFSYLDg----vNTWLGRTISIASRSGYEMLKVPnalt-ddksKP 309 Influenza A virus ...
4H53_A    237 CSGLVGDTPRNDDsssnSNCRNPNne--rgTQGVKGWAFDNg----nDLWMGRTISKESRSGYETFKVIggwstpnskSQ 310 Influenza A virus ...
Feature 1                         #          #                             # # ###########  #
1NMB_N    392 TQGQTIVLNtdWSGYSGSFMDywae--gecyRACFYVELIRGrpkedkvwWTSNSIVSMCSSTEFLGQWNWPDGAKIEY 468 Influenza A virus
1NSC_B    319 AHSGVMVSMkePGWYSFGFEIkdk----kcdVPCIGIEMVHDggk---ktWHSAATAIYCLMGSGQLLWDTVTGVDMAL 390 Influenza B virus (...
3CYE_A    306 SVRQDIVAItdWSGYSGSFVQhpeltgldcmRPCFWVELIRGqpke-ntiWTSGSSISFCGVNSDTVGWSWPDGAELPF 383 Influenza A virus
3SAL_A    312 VKKVEVLNNknWSGYSGAFTIpitmtskqclVPCFWLEMIRGkpeertsiWTSSSSTVFCGVSSEVPGWSWDDGAILPF 390 Influenza A virus (...
Q6XUD6    392 VNRQVIVDNnnWSGYSGIFSVegk----sciNRCFYVELIRGrpqetrvwWTSNSIVVFCGTSGTYGTGSWPDGANINF 466 Influenza A virus (...
7NN9_A    310 TQGQTIVLNtdWSGYSGSFMDywae--gecyRACFYVELIRGrpkedkvwWTSNSIVSMCSSTEFLGQWDWPDGAKIEY 386 Influenza A virus (...
4H53_A    311 VNRQVIVDNnnWSGDSGIFSVegk----sciNRCFYVELIRGrpqetrvwWTSNSIVVFCGTSGTYGTGSWPDGANINF 385 Influenza A virus (...

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