Conserved Protein Domain Family
BRE-like_plant

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cd23666: BRE-like_plant 
BRCA1-A and BRISC complex subunit BRE-like protein found in plants
BRCA1-A and BRISC complex subunit BRE (also known as BRISC and BRCA1 A complex member 2; BRCC4; BRCC45) is a core component of both the BRCA1-A and BRISC complexes. BRCA1-A and BRISC are separate complexes with diverging function; they use the same core of subunits to perform very distinct biological tasks, and are found in all vertebrates. The BRCA1-A complex consists of BRE, Abraxas-1, BRCC36, MERIT40, and RAP80 and specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesion sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSB)s. This complex also possesses deubiquitinase (DUB) activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX. In BRCA1-A, two heteropentamers composed of BRCC36, ABRAXAS, BRE, and MERIT40 form an arc-shaped complex; the two half-arcs contact each other through BRCC36 and its scaffold partner ABRAXAS. BRCC36 is connected to this arc via the ABRAXAS MPN domain. BRE forms the central bridge between the ABRAXAS-BRCC36 MPN domain dimer and MERIT40. BRE's N-terminal ubiquitin-conjugating enzyme variants domain (UEV-N) binds the ABRAXAS MPN, and BRE's C-terminal UEV domain (UEV-C) holds MERIT40 at the extremity of the arc. Loss of BRE significantly impairs BRCA1-A function, resulting in DNA repair defects and loss of cancer suppression. The BRISC complex consists of BRE, BRCC36, MERIT40, and Abraxas 2, and serves cellular stress response and immune signaling functions; it specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates. The BRISC core has the same 2-fold symmetrical arc shape and is structurally similar to BRCA1-A, however the conformation of BRE UEV-C and MERIT40 differs markedly. BRE has different functionality in the BRCA1-A and BRISC complexes: in BRCA1 it is involved in RAP80 integration, BRCA1 sequestration, and ubiquitin binding; in BRISC it is involved in dimerization, SHMT2 recruitment, DUB inhibition, and ubiquitin binding. Homologs of genes encoding components of BRCA1-A and BRISC complexes have been found in plant genomes, including for BRE/BRCC45; plant homologs of BRCC36 have been shown to be involved in DNA repair, and BRCC36-Abraxas 2 complexes have been found in Arabidopsis. This model contains the BRE domain of BRISC complexes found in plants.
Statistics
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PSSM-Id: 467823
Aligned: 9 rows
Threshold Bit Score: 589.334
Created: 8-Dec-2021
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
putative
Feature 1:putative oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on oligomer interface of BRE in Mus musculus BRCA1-A and human BRISC-SHMT2 complexes

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ###    # #       ###         # #          # # # ##   #########      ####
PTQ36428      10 IMPALVPQLEYLRTYSpVPIRIEHIRRGhhna-pyaDRFTACIPCCLDHIKWDVVYNYqtPDLPPDVVFGADdqdFQPLL 88  liverwort
XP_024373967  21 VPSWLNAQLQYLRMHSpVPLKVENLRSGarng-hilDRFSLFVPCCLSYVKWDVVYNGndTRVAPDIIFGADdetFQPLM 99  Physcomitrium p...
ONK59256       7 LPPSIAAQLSYLLNNSpLPLKVDQIWSGcrns-rysDRFTLLIPFCLDYIKWDFMYNEmyPSVPPDIVFSAEdegFNPLL 85  garden asparagus
KMZ64191       6 PPPLIYSQIKYLSTKSpLPFKIEQLRSGdkig-khsDRFTLQIPFCLDYIKWDVIYNAqyPLVAPDFIFSPEdedFHPLL 84  Zostera marina
GAQ87683      31 LEPSIAVQVAALRSYQdLHFKIDKIRRGsphs-eyaDRFIVHIPCGLESVQWHVLYNAaqPNLPPDVVFPPQnsdFQPLL 109 Klebsormidium n...
GBG76819       5 FEPLIAAQVAWVREFRdLDFKIEDVRKGsena-kyaDRFTLVVPCCFERIRWQIIFKAayPTLAPDFVFPAEnetFQPLL 83  Chara braunii
NP_199062      6 FPPLIADQLHYLLNHSpDSIKIANVWSGnkinpkilDRFTLVIPYCLETIKWDVIYNSeyAMDPPDFVFGPDdedFVPCK 85  Arabidopsis tha...
XP_024543430   9 LPRDIVDQVDYLLQNSvLPIQVDGFRKShesh-sffDRFSVLIPCFLEPVRWEVIFSCqhPYWPPDVIFAAHdsdFQPLA 87  Selaginella moe...
ABK25167      24 FSPLIASQLDYLLTRSpLAIKVEQVSYGsrna-ryaDRFTLLLPCCLDYIKWDVVYNSqyPWVAPDVIFGLDddsFQPLS 102 Sitka spruce
Feature 1                         #  ## #                                                        
PTQ36428      89 Fvgddnaaa-qaaalgaWTILRDWTAKDYSRLLRFLLELRSLYLRHQRKRVEfvedPRVRFEIGTISAmEGLEMRIFTGA 167 liverwort
XP_024373967 100 Ddse----------lspCYYLRDWTVADPTRLLKLILLIRGLYLQYQRKKVEevsdERVRFEMSTMAAiQGLEMCVTTIS 169 Physcomitrium p...
ONK59256      86 Eiaggge-----kgeerKSCLRSWSSKDPSKLLSLFLEIRELYLEYHRKRVGelddERLKFETDTILSrKGIEVSVISGP 160 garden asparagus
KMZ64191      85 Fgdkgr-------trfeMGSLCNWNIKDPSRLLLVVNELRKKYLDYQKKRVAelddDRLKFEISTLLSrEGLEVLLLFAS 157 Zostera marina
GAQ87683     110 PppsdnastdpprvvpyVDMISKPHVPEEANLLGMLLALRRLYVQYQRRKVEalqdDRIKFEISTIGHlEGLEVCLAEGP 189 Klebsormidium n...
GBG76819      84 Vmpeipaa--asgkvglLGLLRDWNVRDSARLLRLVLQLRYLYLWHQRKLVErienQRVRFEINSIGAwEGLEICLVGPE 161 Chara braunii
NP_199062     86 Csaiapdd---dqisslEKALSEWDHEDSTRLLVIIQGLRDQYVAYQRRRVGqvddDRVKFEISTVLTrKGIEMQMASGV 162 Arabidopsis tha...
XP_024543430  88 Tns------------siSSILKGWDSKDPSTLLRFLVELRNEYLQYQRKRVEelkdSRLHFEVNTLESiEDLEMGLVTDG 155 Selaginella moe...
ABK25167     103 Ftgegqe-----tsqsiWGIFCDWKYKDPSGLLRLILELRNLYMGYQRKRVEelddPRLKFEISTIIPrEGLEICLLSGI 177 Sitka spruce
Feature 1                       #######                    ##### #                  #######  #   
PTQ36428     168 DrsEEVQFAIPLDIDLTQISRRlgt--------------ssaKLWSGISLQVAFSLQrgqtftgeKAPQLRLHApPAMRD 233 liverwort
XP_024373967 170 EgmEEVNFAFPLVLEMENPHSAtnsq-------------sssITCSDISLQVKFPVRggq--sggGAPQLKLVApEGMRD 234 Physcomitrium p...
ONK59256     161 DraEEVRFAVPLLDEIDLNKLVpgs---------------pwRRQQKFFLQVGFPVNrgfs-asaPTPRIRLVSsPDLKT 224 garden asparagus
KMZ64191     158 DrpQEVKFAIPLLENIPLNKIVqcc---------------pwKQEQKIYLQAIFPITqky--sapSAPRLNLVCtSELKI 220 Zostera marina
GAQ87683     190 DrpEEVHMVIPLPGIDLSPEALlrgrdgpaaa-taaalsppgQPTPRVQLFVRFPLQrgg--gppGAPQLSLNTpPAVRD 266 Klebsormidium n...
GBG76819     162 DrpEEVQLAIPMVDVDLHPLLDlrprldlpgmeslmqelnplVPYQNIILQVKFPLNkastssllPAPQFKVALpVNIRE 241 Chara braunii
NP_199062    163 DkpEEVKFAVPLVMDMNINKMVvgc---------------pwKHQQKIYLQVVYPILrkye-aapSAPRLKLVSyYDLKS 226 Arabidopsis tha...
XP_024543430 156 Dn-ARVIFSIPLHEVDLSKLARqsrl-------------llqPPNTGVVLQVCYPVQreft-flsAVPLIKLHApNVLRE 220 Selaginella moe...
ABK25167     178 ErsDGVKFAVPLLDLDLSNILAgy----------------plRQQQQIFLQVIFPVRkrqs-eipSAPHLKLVAsTTLKE 240 Sitka spruce
Feature 1           #  #####                      #  ## #   #  ### ############# # # # ####  #   
PTQ36428     234 VFDVEDVKLPTWadrmCLMEYVPNVQDILKAQVREAITSVgMRRSFLEALGPVFGRPLELETNLFRRVSIMVTSGlFCFL 313 liverwort
XP_024373967 235 VFDVDDVKLPVWpehmCLVEYKPTLELTLQQQVREARASVrLRRNFVEALFPFFGHPLEVDTLYYRKASILTSFGvFTFL 314 Physcomitrium p...
ONK59256     225 LMATEDIKLPSWvagmCMAEYLPTFEDNLKMQVVEAVAAIgARRRFIEALLPLFGRPVEADSVFCRKASVLASSGvFTFL 304 garden asparagus
KMZ64191     221 VFSIDDVKLPIWingmCMAEYLPNLENSLEAQILAAGASIgARRRFIEALAPVFGRPVEADSVYCRRATVLVAGT-FSFL 299 Zostera marina
GAQ87683     267 ILGDFTQKLPAWtphmCLMEYIPPLQEQLMEQVQLCVASVtYRCRFIEQLPRVFGRPLEVDTKYFRRASVLASHSgFVFI 346 Klebsormidium n...
GBG76819     242 MMDTADIPFQPWteseCLMAYLINLQDQLKDNVKEARMAMdYRRQFIEAIPKVFGHPLEAETVYFRRFTIVACIHvFTFL 321 Chara braunii
NP_199062    227 LFSVEDVKLSPWmdgmCLAEYLPHLEETLERQIHEAVAAIdLRRSFIEALSLNLGRPLEADPTFCRKATFLNASGqFTFM 306 Arabidopsis tha...
XP_024543430 221 VFKVEDVRLPAWtdsmCLAEYIPKLLELLQSQIVDACASLtLRRNFIEALVPVFGRPLEAETDFGRKVSMIASAGvFTFL 300 Selaginella moe...
ABK25167     241 LFDIEDVTLPVWvdgmCMAEYIPNLEENLRAQVSEAIASVnARRLFIEALVPHFGRPLEAETVFCRRVSILAASGnFSFL 320 Sitka spruce
Feature 1         #                ######        #                  #  #  ##  #         
PTQ36428     314 IHFSLPTQFPKQQPTLTFQSSQHFDargrpimSRPYTEYPWSPRWEpsHMAQRIFEFALDECDKFKKYCND 384 liverwort
XP_024373967 315 VHFVLPIQFPKIQPSFTFQSSQHFDargkplvSRLYQDYPWSPRWEasEMAQRIFDFVAEECLAFKRSCGD 385 Physcomitrium patens
ONK59256     305 VHFSIPTQFPRLQPTLTLQSCQNWTnqglaivSPPINDYPWSPRWEvpKMAERIFEFLVDESLAFKKHCAD 375 garden asparagus
KMZ64191     300 VHFALTPQFPKQQPILTMQSSCHFTsqgtpisSPSLRTYPWSPRWEpsIMVERIFEYIGEELLTFKKYCNE 370 Zostera marina
GAQ87683     347 VHFHLSPQFPKDLPILVFQSSLHFNsnavavaSNPYDNYPWSPRWDypEMVRRIGAFVAEEAPYFRTFCDD 417 Klebsormidium nitens
GBG76819     322 AHFTLPAAFPKVPPSFYLQSTQHFDnsskplrSRLYDDFPYSPRWDmdEMVRRIAMFMQDEATAFKKQCQD 392 Chara braunii
NP_199062    307 VHFFFSTQFPKQQPTLMLQSCQHLNqssvpvkSNLLTEYPWSPRWEvgRMAERLCDFLTDEAVNFKKYCNE 377 Arabidopsis thaliana
XP_024543430 301 IHISLPLQFPKVQPTLLLQSSQHFDsqg-rpiSRAYEDYPWSPRWDpsEMVSRICDFITEENASFKQYCNE 370 Selaginella moellendorffii
ABK25167     321 VHFTLPIQFPKQQPILTFQSSQHFDsqgmpitSRLYADYPWSPRWDvsEMTQRILEFIVEESINFKKFCSD 391 Sitka spruce

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