1AXC,1ISQ,1PLQ,1RWZ,1UD9


Conserved Protein Domain Family
PCNA

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cd00577: PCNA 
Click on image for an interactive view with Cn3D
Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Statistics
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PSSM-Id: 238322
Aligned: 78 rows
Threshold Bit Score: 102.322
Created: 7-Mar-2002
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1AXC_A      4 ARLVQGSILKKVLEALKDLINEACWDISsSGVNLQSMDSShvsLVQLTLRse---gFDTYRCd-------------RNLA 67  human
AAP13339    9 ITGTNIKALGRAVHSLSRIGDELYFEPLeDGLCLRSVNSSrsaYACFTLApl---fFHSYEAt------------gGTCH 73  African clawed frog
AAQ62859    6 MSGSQVKVFGKAVQALSRISDEFWLDPSkKGLALRCVNSSrsaYGCVLFSpv---fFQHYQWsalvkmseneldttLHLK 82  human
AAS52330   12 TIHLDRLMCAFNCMTPFGQRDDVLITIDrDGLTFIRQNNHa-aEIQLFLAke---lFQYYSIreg---------feGEIQ 78  Ashbya gossypii AT...
EAK86240    5 TQIADVSIFTRVVQSIGKVANKCILKLTpDKIHMICLGDTdgtQIWSQMQvd--siFQDYRIe-------------SNFQ 69  Ustilago maydis 521
AAH68338    5 ATGANVKVLAKAIHSLSRIGEELYLEPVdDGLALRSVNSSrsaFASFQLSpl---fFQRYQApt-----------dQSFR 70  zebrafish
EAK91087   25 ASTTQIAHLSDIFQSLVSINNQAIIRIKeTGITIYSSYNHt-fNVNVNIDps---lFSIYSIt------------gEEFT 88  Candida albicans S...
EAL18750    5 TGISNVGLLHKIIRSLAALARSCVIKLSeEQVYFIVPGSEsatGVQVWSQvkvstlFEDYRIesn---------snNEIW 75  Cryptococcus neofo...
EAL30993    5 LEGSNARVIAKAVQSLSKVGKEMFIEIEqQGLQMRAINATqsaVGSIFFKrs---mFEVFDMpp-----------sSDFY 70  Drosophila pseudoo...
AAH88725   47 IPGRHTKVFGKAVHSLSRIGNELWFDPVeKGLALRVVNSSrsaYACIFFSpl---fFHKYHRtafleq--aagctqLNFK 121 African clawed frog
Feature 1                     #  ###                                                     #####
1AXC_A     68 MGVNl-------TSMSKILKCAgn----------------eDIITLRAEdnadtLALVFEApnq---------ekVSDYE 115 human
AAP13339   74 CKIHm-------KSVISVFRSLpsle-----------ktveKCLISLNTtn-srLVIQLLCky----------giTKTHN 124 African clawed frog
AAQ62859   83 CKLGm-------KSILPIFRCLnsle-----------rnieKCRIFTRSdk-ckVVIQFFYrh----------giKRTHN 133 human
AAS52330   79 LCMKl-------NHLLDTVSVAnrdk------------ddvVECTLSYDgegtpFMLILEDsmit------eqveYATYL 133 Ashbya gossypii AT...
EAK86240   70 NHINlev---spDTLLKALKSAhn----------------aYSVILRLAkr-nkDPLLSFSisaqshtgaklevvQDVLI 129 Ustilago maydis 521
AAH68338   71 CKMPi-------KSVQAVFKSLssle-----------rsveKCRIQLNSek-srLTITLHCkh----------glLKTHN 121 zebrafish
EAK91087   89 LGVDlsligecfTSVASTLKFEks----------------vTCYLNYQGeg-fpLVIEFEDtyi---------leKLEFY 142 Candida albicans S...
EAL18750   76 VEVNl-------DSLVKVLRSAdnsvgginenmrnsaalsqAEVTLKLNkk-qnQPIWAFDikgytasrksmiitHEINV 147 Cryptococcus neofo...
EAL30993   71 CKISm-------KGCLAVFRNMne---------------veYCELNLIDnq-tnLQVNLRCkl----------etTKEAT 117 Drosophila pseudoo...
AAH88725  122 CKFSv-------KSVLPVFRSLstle------------knvDKCTIYANindgyMNFQLFYkn----------glTKTYQ 172 African clawed frog
Feature 1     ##                            #  ## ##                            #          ## 
1AXC_A    116 MKLMDLDveqlgi--peqeysCVVKMPs-GEFARICRDLShi--gDAVVISCAKDG----VKFSASGe--------lGNG 178 human
AAP13339  125 LSYQDCEslqavy--npdtcpNILRAPa-RLLSDAVMHFPpt--lAEITLMASPCGkv-tLRNYVEEdv------daTKA 192 African clawed frog
AAQ62859  134 ICFQESQplqvif--dknvctNTLMIQp-RLLADAIVLFTss--qEEVTLAVTPLN----FCLKSSNees----mdlSNA 200 human
AAS52330  134 VGEMDRTgleld----rarleFECILKg-DVLYSALRDLReigckECYLYIVTSSRarpmFALVSRGq--------lGLS 200 Ashbya gossypii AT...
EAK86240  130 KVLKPAEmsrivep-lcpepdVHIILPklLHLRTVADHMRsl--sDVVTLSANRQGe---LRLSVVEdevsldttwsGLA 203 Ustilago maydis 521
AAH68338  122 LSFQDCEslqavf--dkesctNVLQAQp-RLMVDTVLHFPps--lEEVNLSVSSDRv--wLRNHVEDda------dsSRA 188 zebrafish
EAK91087  143 TYIIESGmeddnlgidyerveMEAMVRs-DVLTNILSDLWqi-dtENLFIYAEADT----LTFISNGp---------IGT 207 Candida albicans S...
EAL18750  148 KILSSRRqedlkep-lcprpdIHVVLPnlQELRNIVSRLApv--aDDVDVSANHEGt---MELAVRS----------SKV 211 Cryptococcus neofo...
EAL30993  118 ISIIDDQnintnv--dtdqrpNIIRGDh-KLFMDISNNFNsa--eEELTMEANTGS----LVAKNYIe--------gARV 180 Drosophila pseudoo...
AAH88725  173 LAYEDCEplqavf--anntcpNVLRIQp-RVLSDVVVHFPtc--qEEITLCVTPLR----VSFKTYCeea----fefSKS 239 African clawed frog
Feature 1     #####                                                                           
1AXC_A    179 NIKLSqtsnvdkee-----eavtiemnePVQLTFALRYLNFFTKATpl-----sSTVTLSMSad---------vPLVVEY 239 human
AAP13339  193 MLTELalsrdef---------lvynlkkQSDITFCLREFRGLLSFAes----tsLPVSIHFNsa--------gcPAVFSV 251 African clawed frog
AAQ62859  201 VHSEMfvgsdef---------dffqigmDTEITFCFKELKGILTFSea----thAPISIYFDfp--------gkPLALSI 259 human
AAS52330  201 KIILPsersvleklevyendsttlihdaPVIGLFDFAALDKLRPSTki-----aSKVLIRKDv-----------HGLLAV 264 Ashbya gossypii AT...
EAK86240  204 HPTIEasqsspaq-------nqesdpsqHKSVNLETKSLLKFLSSYl------vATTTIACIca---------nHCAIFY 261 Ustilago maydis 521
AAH68338  189 MMTELclsseef---------dhfaissQTSITFCLKELRGLLGFAes----scLPISMYFDe-----------PGSPVI 244 zebrafish
EAK91087  208 SKLIFpndkdvlek------leisgdkrYVVSQFSYETFYRIFRAVrl-----sSKCKLIKDahgcfsiqllckKLPLSG 276 Candida albicans S...
EAL18750  212 NLTTTwkdlpipvt-----nrmcllphhLLHLYHCHTYLQSILTLTip-----iDLVEEEGEeaeq-----pppPGQMMT 276 Cryptococcus neofo...
EAL30993  181 NDKFMrtqlklk---------psefdqyQVTKETIITFCIKEFRAFllfaeclnASLSLEFDda--------gsPFMLKI 243 Drosophila pseudoo...
AAH88725  240 VHTEMhlspeef---------hyfqigvDSEVTFCLKELRGFLAFAdt----tsSYISLYFSkp--------gkPVAFSM 298 African clawed frog
Feature 1                              
1AXC_A    240 Kiad--------mgHLKYYLAPKIE 256 human
AAP13339  252 Ddt---------vlEVHFVLATLSD 267 African clawed frog
AAQ62859  260 Ddm---------lvEANFILATLAD 275 human
AAS52330  265 Nil----------sDTNAILVPEKR 279 Ashbya gossypii ATCC 10895
EAK86240  262 Vyigdv---dkssgVMTFFLPGVVR 283 Ustilago maydis 521
AAH68338  245 Lnvtd------svlEANFVLATLSE 263 zebrafish
EAK91087  277 YsgtlvtinmmelnHDEFMIGWIEE 301 Candida albicans SC5314
EAL18750  277 Ttvt-------ikaLLKFLTSYVIS 294 Cryptococcus neoformans var. neoformans B-3501A
EAL30993  244 Kkhge-----ieclLIMSTLSPDDV 263 Drosophila pseudoobscura
AAH88725  299 Dnm---------ffEANLILATLAE 314 African clawed frog

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