Conserved Protein Domain Family
GBV-C_env

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pfam12786: GBV-C_env 
GB virus C genotype envelope
This the envelope protein from the ssRNA GB virus genotype C.
Statistics
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PSSM-Id: 193262
Aligned: 6 rows
Threshold Bit Score: 582.914
Created: 21-Aug-2024
Updated: 23-Aug-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9YW91  120 RVYPLPNLTCAVECDLKWESEFWRWterlaSNYWILEYLWKVPFDFWRGVMSLTPLLVCVAALLLLEQRIVMVFLLVTMA 199  GB virus C
O56073  121 RLGRLPNLTCHLKCDFAFSYPGISV-----DFDWAFKKILELPSRLWCGLSRAGVLALLVVMMLGLEQRLVLALLLLIVV 195  Pegivirus A
O41892  120 RVGRMPALNCSLRCNFDYSYPGISV-----DFDWAFTTLIHLPGKLWRGFTNASMLAVLVIIMLVLEQRLLMAFLLLLVV 194  Pegivirus A
Q96898  120 RLSRIPNVTCVKACDLEFTYPGLSI-----DFDWAFTKILQLPAKLWRGLTAAPVLSLLVILMLVLEQRLLIAFLLLLVV 194  Pegivirus A
O56074  122 EWTPRPNVTCLMDCDLALQSEAWDLvedmrDTFWTVKWVMTLPWRLWVGLVGMSFALMVVVVLLLLEQRVVMVLIVLAMA 201  Pegivirus A
Q9WBT6  229 HAYPLPNLTCAVECEMEWGTEFWRWtqevaSQYWILEYLWRLPFDFWKGVMALDVLLAFVAALLLLEQRLVMLFLLVTTA 308  GB virus C variant ...
Q9YW91  200 GMSQGApasvlgsrpfdyglTWQSCSCRANGSRFP-TGEKVWDRGNVTLLCDCPNGPWVWLPAFCQAIGWGDPITHw-sH 277  GB virus C
O56073  196 GEAYCD--------------VFEACHCAHWGGRPP-PRITPWVRGNGSVECTCPFGRMVWNPVLCSGLIWKDGSRE---G 257  Pegivirus A
O41892  195 GEAQGG--------------IFDNCHCAYWGGRPP-PRLDINYRGNGTVVCECDFGKMHWAPKLCSGLLWRDGARE---G 256  Pegivirus A
Q96898  195 GEAQRG--------------MFDNCVCGYWGGKRP-PSVTPLYRGNGTVVCDCDFGKMHWAPPLCSGLVWRDGHRR---G 256  Pegivirus A
O56074  202 GSVEP---------------FTGGCRCHVNGSIVAiPGAKPEDRPNATQVCVCPFGQMYWLPALCAGLAWRNGDVS---G 263  Pegivirus A
Q9WBT6  309 GMAASRptgdlgarpfvpgpGW-GCTCYEDGSRVP-TDKQVWERGNKTLLCDCPNGPWVWLPSICGGVAWGSGVVKtwsH 386  GB virus C variant ...
Q9YW91  278 GQNQWPLSCPQYVYGSASVTCVWGSVSWFASTGgrdSRIDLWSLVPvGSASCTIAALGSSDRDH---VVELSEWGVPCVT 354  GB virus C
O56073  258 NVYDLPPVCPSEVLGTVAVMCRWGSAYWAWRLG---DWVELHRELP-RSALCVFHSFTQRMNMWpkdVDFLTPEGTPCAS 333  Pegivirus A
O41892  257 TVWTLPRVCPREVLGTVSAVCQWGSAYWVWRFG---DWVPLYDELP-RSALCTFYA---GTGRYpadVDVLNPSGPPCAS 329  Pegivirus A
Q96898  257 TVRDLPPVCPREVLGTVTVMCQWGSAYWIWRFG---DWVALYDELP-RSALCTFFS---GHGPQpkdLSVLNPSGAPCAS 329  Pegivirus A
O56074  264 TTRDLPVRCPESMHGRGSVMCVWGSAHWSWRLA---TEVRLWEQLP-GSALCHFFAVGTTDRPHp-aTDVLSTHGIPCAS 338  Pegivirus A
Q9WBT6  387 GQNQWPLSRPRYVHGHITATCVWGSRSWFSSTRg-dGTIDLWSLVStGSALCTIAVLGTSDRDV---VPGLSTFGIPCVS 462  GB virus C variant ...
Q9YW91  355 CILDRRPASCGTCVRDCWPETGSvrfPFHRCGAGPRLTKDLEAVPF-----VNRTTPFTIRGPLGNQGRGNPVRSPLGFG 429  GB virus C
O56073  334 CVVDQRPAWCGSCVRDCWETGGP---DFASCGIGTQVTEHLEAVLVhggveSVVTTPRGERPKYLGHHGQGAYYGAVSKL 410  Pegivirus A
O41892  330 CVVDQRPRKCGDCVRDCFETGGP---GFEECGVGVRVTSLLTAVLVdggveSKVSTPVGERPKYLGQHGQGTFYGAVKKL 406  Pegivirus A
Q96898  330 CVVDQRPLKCGSCVRDCWETGGP---GFDECGVGTRMTKHLEAVLVdggveSKVTTPKGERPKYIGQHGVGTYYGAVRSL 406  Pegivirus A
O56074  339 CVVDRRASWCGNCTRDCWEKTGNkrlSFEACGLGSRLTAELWAHVVdggteSKIVTDVGERPRYPSSHGVGTHHTAV-VA 417  Pegivirus A
Q9WBT6  463 CVVDRRPPSCGGCVRDCWPETGEfgtPFAKCGLGPRLTEHLMAVPF-----VNRSVPFQIRGPLGFQGSGNPLRNPLRGG 537  GB virus C variant ...
Q9YW91  430 SYTMTKIRDSLHLVKCPTPAIEPPTGTFGFFPGVPPLNNCMLlgTEVSEALGGAgLTGGFYEPLVRRCSELMGRRNPVCP 509  GB virus C
O56073  411 STNYTVTQIGGYWHALKCPCVEFPSGDLPRRIPGIPVNACLS--GAGPHPFTAW-APGGWYAPVFTKCNWPTTPGVDVCR 487  Pegivirus A
O41892  407 GVNMTVSQIGGYWHALQCPC-DFTPGPLPERIPGIPVNACIT--GKAAHPFSAW-APGGFYAPVFTKCNWPTVPGVDVCN 482  Pegivirus A
Q96898  407 NISYLVTEVGGYWHALKCPC-DFVPRVLPERIPGRPVNACLA--GKSPHPFASW-APGGFYAPVFTKCNWPKTSGVDVCP 482  Pegivirus A
O56074  418 ARNYTVSDIGGYWHAIACPN-PPSPSALPKLIPGRPVNACLTicKEKGRLNTAWqAPGGXFAPIFTECNWPRRSGVRVCE 496  Pegivirus A
Q9WBT6  538 TFTMTLIDGSLHLVECPTPPPSHPEGTYGFFPGAPPVNNCFLlgTEVSEELGGAgMTGGAFEPLVRRCSLLSGKRHTVCP 617  GB virus C variant ...
Q9YW91  510 GYAWLSSGRPDGFIHVQGHLQEVDAGNFIPPPRWLL 545  GB virus C
O56073  488 GFAYDFPGDHNGFIHVVGARQQXYSGVMRSSPAWLL 523  Pegivirus A
O41892  483 GFAFDFPGDHNGFIHVKKGRQQIFSGQRRSSPTWLL 518  Pegivirus A
Q96898  483 GFAFDFPGDHNGFIHVKGNRQQVYSGQRRSSPAWLL 518  Pegivirus A
O56074  497 GYAFDFPGSKTGFIRSRAGFQQIARAGSMPHPRWLL 532  Pegivirus A
Q9WBT6  618 GFAWVSSSRPDGFIHVKGGVQEVDDHSWAPPPRWLL 653  GB virus C variant troglodytes
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