Conserved Protein Domain Family
7tmA_Mel1

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cd15209: 7tmA_Mel1 
melatonin receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors
Melatonin (N-acetyl-5-methoxytryptamine) is a naturally occurring sleep-promoting chemical found in vertebrates, invertebrates, bacteria, fungi, and plants. In mammals, melatonin is secreted by the pineal gland and is involved in regulation of circadian rhythms. Its production peaks during the nighttime, and is suppressed by light. Melatonin is shown to be synthesized in other organs and cells of many vertebrates, including the Harderian gland, leukocytes, skin, and the gastrointestinal (GI) tract, which contains several hundred times more melatonin than the pineal gland and is involved in the regulation of GI motility, inflammation, and sensation. Melatonin exerts its pleiotropic physiological effects through specific membrane receptors, named MT1A, MT1B, and MT1C, which belong to the class A rhodopsin-like G-protein coupled receptor family. MT1A and MT1B subtypes are present in mammals, whereas MT1C subtype has been found in amphibians and birds. The melatonin receptors couple to G proteins of the G(i/o) class, leading to the inhibition of adenylate cyclase.
Statistics
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PSSM-Id: 320337
Aligned: 5 rows
Threshold Bit Score: 494.297
Created: 23-Sep-2008
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:
  • Comment:based on the structures of some class A family members with bound ligands (peptides or chemicals), agonists, or antagonists
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             #  ##           ###### #
P48039     28 SALACVLIFTIVVDILGNLLVILSVYRNKKLRNaGNIFVVSLAVADLVVAIYPYPLVLMSIfnngWNLGylhCQVSGFLM 107 human
P49286     41 PALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNaGNLFLVSLALADLVVAFYPYPLILVAIfydgWALGeehCKASAFVM 120 human
Q13585     29 IFMFCAMVITIVVDLIGNSMVILAVTKNKKLRNsGNIFVVSLSVADMLVAIYPYPLMLHAMsiggWDLSqlqCQMVGFIT 108 human
P49288     25 SGLAAVLIVTIVVDVLGNALVILSVLRNKKLRNaGNIFVVSLSVADLVVAVYPYPLILSAIfhngWTMGnihCQISGFLM 104 chicken
BAI39600   31 TALASVLIFTIVVDILGNVLVILSVYRNKKLRNaGNIFVVSLSVADLVVALYPYPLVLTAIfhndWTMGdlhCQASGFIM 110 grass puffer
Feature 1     #  #                                            # #####                     #  #
P48039    108 GLSVIGSIFNITGIAINRYCYIChslkYDKLYssKNSLCYVLLIWLLTLAAVLPNLRAGtlqYDPRIYSCTFaqsvSSAY 187 human
P49286    121 GLSVIGSVFNITAIAINRYCYIChsmaYHRIYrrWHTPLHICLIWLLTVVALLPNFFVGsleYDPRIYSCTFiqtaSTQY 200 human
Q13585    109 GLSVVGSIFNIVAIAINRYCYIChslqYERIFsvRNTCIYLVITWIMTVLAVLPNMYIGtieYDPRTYTCIFnylnNPVF 188 human
P49288    105 GLSVIGSIFNITAIAINRYCYIChslrYDKLFnlKNTCCYICLTWTLTVVAIVPNFFVGslqYDPRIYSCTFaqtvSTSY 184 chicken
BAI39600  111 GLSVIGSIFNITAIAINRYCYIChslhYDRLYslRNTCCYLGLTWLLTALATVPNFFIGslqYDPRIYSCTFtqtvSSYY 190 grass puffer
Feature 1     ## ### ##                                                      #  ## ##  #      
P48039    188 TIAVVVFHFLVPMIIVIFCYLRIWILVLqvrqrvkpdrkpklkPQDFRNFVTMFVVFVLFAICWAPLNFIGLAVASDPas 267 human
P49286    201 TAAVVVIHFLLPIAVVSFCYLRIWVLVLqarrkakpesrlclkPSDLRSFLTMFVVFVIFAICWAPLNCIGLAVAINPqe 280 human
Q13585    189 TVTIVCIHFVLPLLIVGFCYVRIWTKVLaardpag--qnpdnqLAEVRNFLTMFVIFLLFAVCWCPINVLTVLVAVSPke 266 human
P49288    185 TITVVVVHFIVPLSIVTFCYLRIWILVIqvkhrvrqdckqkirAADIRNFLTMFVVFVLFAVCWGPLNFIGLAVSINPsk 264 chicken
BAI39600  191 TISVVVIHFLIPVLVVSYCYLRIWVLVIqvkqrvkpdqrpklkPSDVRNFLMMFMVFVLFAVCWAPLNLIGLAVAINPvk 270 grass puffer
Feature 1          ## ###  #  ##                     
P48039    268 mvprIPEWLFVASYYMAYFNSCLNAIIYGLLNqNFRKEY 306 human
P49286    281 mapqIPEGLFVTSYLLAYFNSCLNAIVYGLLNqNFRREY 319 human
Q13585    267 magkIPNWLYLAAYFIAYFNSCLNAVIYGLLNeNFRREY 305 human
P49288    265 vqphIPEWLFVLSYFMAYFNSCLNAVIYGLLNqNFRKEY 303 chicken
BAI39600  271 vapnIPEWLFVTSYFMAYFNSCLNAIIYGLLNqNFRKEY 309 grass puffer

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