3KIO


Conserved Protein Domain Family
RNase_H2-C

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cd09271: RNase_H2-C 
Click on image for an interactive view with Cn3D
Ribonuclease H2-C is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
Ribonuclease H2C is one of the three protein of eukaryotic RNase H2 complex that is required for nucleic acid binding and hydrolysis. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with RNase H2B and RNase H2C proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder.
Statistics
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PSSM-Id: 187752
Aligned: 37 rows
Threshold Bit Score: 49.2916
Created: 21-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotrimeric
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotrimeric interface
Evidence:
  • Structure:3KIO_C, Mouse RNase H2/II heterotrimeric interface at 4.0 A
  • Comment:Mammalian RNase H2/II is a heterotrimeric complex of the RNase H2A, H2B, and H2Cproteins that are required for RNase H2/II activity and function.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #####                  #                     # ######              ####         
3KIO_C        30 HLLPCDVlvsrpapvdrFFTPAVRHda---------------dgLQASFRGRGLRGEEVavpp-gfaGFVXvteekgegl 93  house mouse
XP_001524552  18 SLLPMHIqhsgaantaeYFTPSHTTetlrd----------gstiSTAFFRGCRLIGKDLnlleqnlqGFVMnssellire 87  Lodderomyces el...
Q10448        22 SLLPCHIsydgpapvfeYFHDKIQIsnnt------------hskTTVCLRGRELNGEELdlpe-nytGQVVlcddglend 88  fission yeast
XP_001384470  16 NLVPMHIqysgpaktneYFTPSKTQed---------------gnTNAYFRGCKLVGTEItlk--nhtGYIInksetlvhd 78  Pichia stipitis...
Q59TM7        17 SVVPMNIqysgpantedYFAPSKTQetqpd----------gtllDVAYFRGCKLVGKTLeldkydvkGYVInksehlvsd 86  Candida albicans
EDK40448      16 SLLPLHIqysgpantkeYFSDTKSTekvg-----------neerEIAYFRGCRLVGHKTnwdg-kycGYIMnksetiaha 83  Pichia guillier...
Q6BHM8        17 NIVPCHIqyngaantkdYFTPSKKQdtlpt----------geqvEVAYYRGCKLVGKNMnisn-dysGYLInkseslarv 85  Debaryomyces ha...
XP_001646912  18 HLVPCKIryng---psdEFTDNFNMdneemevlnndvadeskqvYVNYIRGRKIIGQDVlpi--fgeGSKAfltenviss 92  Vanderwaltozyma...
Q54EP5        32 QRLPFSIgyngfakvsnYFQVTDKPattttttttttpspddkkyLYSSFRGIQLIGEKIkipn-gfdGYVFrdedeqdnn 110 Dictyostelium d...
XP_001321669   6 EWIPGRLptdheanveaYFDSRVKKldn--------------gyLVGFFRGRELCGKPLel----peGYTQkivkiedg- 66  Trichomonas vag...
Feature 1                                                    
3KIO_C        94 igklnfsgdaedkadeaqeplerdfdrligatgsFSHFTLWGLE 137 house mouse
XP_001524552  88 enledg-------------tetiksvksytpvatFDKLVLFGHD 118 Lodderomyces elongisporus NRRL YB-4239
Q10448        89 etse-----------------keipestwcinstFEKVMLWNRD 115 fission yeast
XP_001384470  79 pemaddg-----------sgdniktvstysptakFETITIYGHD 111 Pichia stipitis CBS 6054
Q59TM7        87 ketg-----------------evktavtyipvgnFQKLTVYGHD 113 Candida albicans
EDK40448      84 npadtegia--------ngtaeiknvkvynpiakFDSMTLYGHD 119 Pichia guilliermondii ATCC 6260
Q6BHM8        86 edets---------------edyltvntytpvakFEEITVYGHD 114 Debaryomyces hansenii
XP_001646912  93 datmee-------------efdntesinakpiatLNKLINYERD 123 Vanderwaltozyma polyspora DSM 70294
Q54EP5       111 -------------------------nrkwepiskFNELTYWNRE 129 Dictyostelium discoideum AX4
XP_001321669  67 ---------------------------hikdfkeVSKVTMWDLN 83  Trichomonas vaginalis G3

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