Conserved Protein Domain Family
7tmA_PGD2

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cd15140: 7tmA_PGD2 
prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors
Prostaglandin D2 receptor (also called prostanoid DP receptor, DP1, or PGD2R1) is a G-protein coupled receptor whose endogenous ligand is prostaglandin D2 (PGD2). PGD2, the major cyclooxygenase metabolite of arachidonic acid produced by mast cells, mediates inflammatory reactions in response to allergen challenge and causes peripheral vasodilation. PGD2 exerts its biological effects by binding to two types of cell surface receptors: a DP1 receptor that belongs to the prostanoid receptor family and a chemoattractant receptor-homologous molecule expressed on the T-helper type 2 cells (CRTH2 or PD2R2).
Statistics
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PSSM-Id: 320268
Aligned: 3 rows
Threshold Bit Score: 465.14
Created: 15-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:
  • Comment:based on the structures of some class A family members with bound ligands (peptides or chemicals), agonists, or antagonists
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                           #  ##        
Q13258        17 GNSAVMGGVLFSTGLLGNLLALGLLARSGLgwcsrrp-lrplpsvFYMLVCGLTVTDLLGKCLLSPVVLAAYAQNRSLrv 95  human
XP_002936956  34 QSLVVSSSLLFAAGLLGNLIALFILWLHKLhakk--------tsvFYVLVTVLTVTNLMGKCLLCPVVQVAYFQNQSLvg 105 western clawed ...
XP_007438416  17 GQSVLPSSLLFAAGLLGNVLALGLLWQHHLkaklqrgegrprasaFYLLVSALTATDLLGKCLLSPIVLAAYAHNRSLld 96  Burmese python
Feature 1                  ###### ##  #                                            # #####       
Q13258        96 lap-aldnsLCQAFAFFMSFFGLSSTLQLLAMALECWLSLGHPfFYRRHItLRLGALVAPVVSAFSLAFCALPFMGFgkf 174 human
XP_002936956 106 mt---gnlnLCKVFGFLMIFCGLAPTFILLAMAVDCWLALGYPfFYQENInKKLALLVSLILYVFCLGFCCLPFFGFgry 182 western clawed ...
XP_007438416  97 lwppaaateLCQLFAFLMAFFGLASTMLLLAMALECWLSLGHPyFYERHAsRRWGALLTGAAAALCALFCALPFLGFgsn 176 Burmese python
Feature 1                            #  ### ### ##                                               
Q13258       175 vQYCPGTWCFIQMVHeegslSVLGYSVLYSSLMALLVLATVLCNLGAMRNLYAMHrrlqrhprsctrdcaepradgreas 254 human
XP_002936956 183 kQYCPGTWCFIQMTAeesstSALAYSMLYGTIMGLLILAIVFCNLMIMKNLYQMYkrenekgipsa-------nfpnqqe 255 western clawed ...
XP_007438416 177 vQYCPGTWCFIRMAG-----GGRIYSVLYASLLGVLVLAVGLCNLGSMRSLYRMArrqpprrthltdlq-gaaaplrppc 250 Burmese python
Feature 1                               #  ## ##  #            ## ###  #  ##                     
Q13258       255 pqpLEELDHLLLLALMTVLFTMCSLPVIYRAYYGAFKdvkeknrtsEEAEDLRALRFLSVISIVDPWIFIIFRspVFRIF 334 human
XP_002936956 256 pagMEELEHLILLAIMTVLFAACSFPLTARVYVGAFKge------kNEYADLTVLRLLSLNSTLDPWIFIICTtsKFRGH 329 western clawed ...
XP_007438416 251 arrTEELGQLVLLALMTALFTICSLPVIIRAYIGAFApd------aDEAADLTALRFFSVNSIVDPWVFIIFRtsIFRSF 324 Burmese python
Feature 1         
Q13258       335 F 335 human
XP_002936956 330 L 330 western clawed frog
XP_007438416 325 L 325 Burmese python

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