Conserved Protein Domain Family
Tudor_TDRD9

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cd20431: Tudor_TDRD9 
Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins
TDRD9 is an ATP-dependent DEAD-like RNA helicase required during spermatogenesis. It is involved in the biosynthesis of PIWI-interacting RNAs (piRNAs). A recessive deleterious mutation mutation in TDRD9 causes non-obstructive azoospermia in infertile men. TDRD9 contains an N-terminal HrpA-like RNA helicase module and a Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410502
Aligned: 8 rows
Threshold Bit Score: 150.231
Created: 27-Oct-2006
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor-like family proteins with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                              #           #              
Q8NDG6        905 TEVVEVGHFWGYRidenNSEILKKLTAEINqltlvp---lpthphPDLVCLAPFadf---dkqRYFRAQVLYvs--gnSA 976  human
AAI25755      633 TEVVEVGHFWGFSidtkSMAILEELATNIRqqqlvp---lterphSNMMCLAPFtnk---dseSYYRAQILYis--gsTA 704  western clawe...
B8A4F4        862 TEVIDVGHFWGFQtdenSVEKQCQLTAALNmrdlrp---lsvslyPNLLCVAPFkdgq--qmaKYYRAKVLHil--gsNV 934  zebrafish
XP_014348409  819 TEVVEVGHFWGYKiddkSMHILRNLTAEVNqqqllp---lttrprPDLVCLAPFtds---dekRYYRAKILYvs--gdDA 890  coelacanth
XP_007886452  912 TEVVEVGHFWGYRtdgeSLHTLSKLMTEINqmkltp----lavepYPDVCLAPFtdc---setHYYRAKVLQvs--gdSA 982  elephant shark
KFM80346      684 SHFINCGHFWAQSptleNTNYLKFLDLSINkrqgqnlmplthkpvPEMLCLAPYsdaesgimpKYYRAQIQKvm--gsTV 761  Stegodyphus m...
KYO45366      899 TEVVEVGHFWGYRidenSLTVLQTLAAEISrfvlmp---lpisphPDLLCLAPFsel---enkRYYRARILYvs--gdSA 970  American alli...
ODN04338     2402 QHIVSPSQFWVVFn--iNSGQMQQIERSIHenqyait-lprskcvPNGFCLAPFe-------nVYYRAKIIRvfnngqSC 2471 Orchesella ci...
Feature 1            #  # #                    
Q8NDG6        977 EVFFVDYGNKSHVdlhLLMEIPCQFLELP 1005 human
AAI25755      705 MVFFVDYGNKSQVeltLLRMIHETILNIP 733  western clawed frog
B8A4F4        935 EVFFVDFGNTTVVpssSLRELPSDLMTPA 963  zebrafish
XP_014348409  891 EVFFVDYGNTAKVnssLLRNIPALEFQIC 919  coelacanth
XP_007886452  983 EVFFVDYGNTAQVpshLLRNISSQFLELP 1011 elephant shark
KFM80346      762 EVFFIDYGNVENVeveQLREIDENTPDVL 790  Stegodyphus mimosarum
KYO45366      971 EVFFVDYGNRLRVplnLLMEIPHHLRALP 999  American alligator
ODN04338     2472 LVYFVDYGNTNLVqtsCLNDFPPTLRTLG 2500 Orchesella cincta

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