Conserved Protein Domain Family
RETR_RHD

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cd22558: RETR_RHD 
N-terminal reticulon-homology domain of Reticulophagy regulators and similar proteins
This subfamily includes Reticulophagy regulators 1-3. Reticulophagy regulator 1 (RETREG1/FAM134B) is an endoplasmic reticulum (ER)-anchored autophagy receptor that regulates the size and shape of the ER. It regulates turnover of the ER by selective phagocytosis, mediating ER delivery into lysosomes through sequestration into autophagosomes. It promotes membrane remodeling and ER scission through its membrane bending activity, and targets the fragments into autophagosomes by interacting with ATG8 family modifier proteins such as MAP1LC3A, MAP1LC3B, GABARAP, GABARAPL1 and GABARAPL2. RETREG2/FAM134A and RETREG3/FAM134C has been shown to interact with ATG8 family modifier proteins MAP1LC3A, MAP1LC3B, GABARAP, and GABARAPL1. Members of this subfamily contain an N-terminal reticulon-homology domain (RHD) that shows sequence similarity to ADP-ribosylation factor-like 6 binding factor 1 (Arl6IP1 or Arl6ip-1), an ER protein that has an important role in cell conduction and material transport. The RHD may function in inducing membrane curvature.
Statistics
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PSSM-Id: 411697
Aligned: 13 rows
Threshold Bit Score: 256.846
Created: 21-Sep-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q86VR2        41 ALVEVLGPYEPLLs-rVQAALVWERPARSALWCLGLNAAFWFFALTSLRLVFLLAFGLMIIVCIDQWKNkiw-------- 111 human
ELU13960      19 GLLRLLGPRENCIm-sVQSVLVWENPKYSASILLAVSLIFWLATTLRIFYLIGVTGAVIVFLDMWFNYIwp--------- 88  Capitella teleta
XP_030845916  37 RLRSILSPIEGLVm-nIQSLLVWENAQPSAVLFVCVNIVFWLAVTTNQRVVFISTMICFIVMCIETFRFrvw-------- 107 Strongylocentro...
XP_013071506  19 KLTFFLGPYETVIm-kLQSLLVWENPFRSAILFTLFHIIFWLICTTSSRFFFLLSVFVMCIVCIDTWKNkiw-------- 89  Biomphalaria gl...
XP_002591923  12 ILTKILNPFETGFl-yFQRVLVWEKPTHSAVLMFLVNGAFWLATSTNYRFFFLLAMCAMVAVCAEIWRNriwptirvqcn 90  Florida lancelet
XP_006814095  35 KLKKVLSPFEPVIm-yMQGVLVWEKPGHSVIMLLCVNGVFWLVTTTNYRVVFMLAVTGIVVICIETWKNrv--------- 104 Saccoglossus ko...
XP_013407732  37 KLRDLLNSIEPHVm-hAQSILVWEKPGQSAVMLLGVNVVFWLATTTCIRAFCLLAITAMLFFLLDTWQNhiw-------- 107 Lingula anatina
Q8NC44        55 TLWLRLRGWEAVLa-aAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLLDLWQPrflp------- 126 human
XP_002126378  24 KLYNWSRSYESVIl-yFQRLLVWEKPTHSSVFLILIHIGFWYLTARSSHAIGFLSSMLLGLVWLDMWKHki--------- 93  vase tunicate
Q9H6L5        67 AVTWLLGEPVLWLgcrADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDmvl-------- 138 human
XP_029841505  44 TFLRLFGPFEAYLv-sIQSLLIWERPYLSAVALVAVNIFFWLVVSCSKRLYSFLAIVAAVVFMYRTWVDsiwp------- 115 Ixodes scapularis
XP_029641602  10 LLEAILSPWEGWIl-rIQSLLIWEKPRWAIVWLCLIHLLFWFFYNIPLNFYSFCCCSVIVLFILDLLINkiwkkits-vf 87  Octopus vulgaris
XP_013401821  37 KLRDLLNSIEPHVm-hAQSILVWEKPGQSAVMLLGVNVVFWLATTTCIRAFCLLAITAMLFFLLDTWQNhiw-------- 107 Lingula anatina
Q86VR2       112 ---peiKVPRPDALDNES-WGFVHPrllsvPELCHHVAEVWVSGTIFIRNVLLFKKQNPg-------------------- 167 human
ELU13960      89 ----eiRVPPSPDEDTEG-WISIHPhllsvPEICNHLATAVVSMEDFIEKACRMRKKSRa-------------------- 143 Capitella teleta
XP_030845916 108 ----pkMQVNPKSSDEED-WTPLHLrllsvPELCDHVARAWQVADEWYNAFWDLRRHEPa-------------------- 162 Strongylocentro...
XP_013071506  90 ---peiRVPPTEPEDSDG-WTPIHPrllsvPEISRHLSHSINIVVTFFKSARQYRTSHPl-------------------- 145 Biomphalaria gl...
XP_002591923  91 hqeaqyNTLRMFLFAHSS-WAVVHPrllsaPELAHHIAEGWVAFAWSCKKLWEMKKNSPg-------------------- 149 Florida lancelet
XP_006814095 105 ----wpEITVEKHEKEEG-WTPLHPrllsvPELCHHLAETWVFFTTFCSSVWQMRKDQPg-------------------- 159 Saccoglossus ko...
XP_013407732 108 ---peiKAPPSPGEDTDS-WVSVQPhlmsvPEISRYAAEMWVTASVYSHLLWNMRKRHPg-------------------- 163 Lingula anatina
Q8NC44       127 --dvsaSSPEEPHSDSEGaGSGARPhllsvPELCRYLAESWLTFQIHLQELLQYKRQNPa-------------------- 184 human
XP_002126378  94 -----wPEIRAEEPDPEAeWGELHPkllslPELCQIIAEGLVTLTTVYKKIVEFKSDFPg-------------------- 148 vase tunicate
Q9H6L5       139 ---srtRGAQLWRSLSES-WEVINSkpderPRLSHCIAESWMNFSIFLQEMSLFKQQSPg-------------------- 194 human
XP_029841505 116 ---eirVPPPEGEEDPEQ-WTPIHPqvlsvPELNRYFTDWTASVKRWAQNVAALRKTHPg-------------------- 171 Ixodes scapularis
XP_029641602  88 lrirtrFCNRFKIKVPES-QVSVQShlltvPELCQHFNQSMSCIQSTLRRWLNFRREHPl-------------------- 146 Octopus vulgaris
XP_013401821 108 ---peiKAPPSPGEDTDS-WVSVQPhlmsvPEISRYAAEMWVTASVYSHLLWNMRKRHPgkargitqiwvsvqphlmsvp 183 Lingula anatina
Q86VR2       168 -----------------------------kFCLLSCGILTFLAVLGRyVPGLLLSYLMLVTVMMWPLAVYHRLWDRayvr 218 human
ELU13960     144 -----------------------------kFFILSMISLSSLAVFGCyVSGIRLLYISVLAVMLCPAAFYHHVPQKtfaf 194 Capitella teleta
XP_030845916 163 -----------------------------kFCTFTCLLCLTTATIGFyIPGVLISYTILICLLLWPAYLYHDVSGKiytk 213 Strongylocentro...
XP_013071506 146 -----------------------------vFCLGNTAFFTLTALIGYyISGFLLLYGTLISLMLWPSMLYHSMLRKvcsl 196 Biomphalaria gl...
XP_002591923 150 -----------------------------kFTALVCVSCGAMALVGIyIPGVMIAYIIVMSLLLWPCVEYHRVIQRiynr 200 Florida lancelet
XP_006814095 160 -----------------------------kFCMWVCCVCSVLAFVGHyIPGVMLSYIIMLSLLLWPVVEYHNVNQHiynk 210 Saccoglossus ko...
XP_013407732 164 -----------------------------kFCILICTGSFCLAGIGHyIPGIMISYIIVMSILLWPCVVYHNLLQKfyih 214 Lingula anatina
Q8NC44       185 -----------------------------qFCVRVCSGCAVLAVLGHyVPGIMISYIVLLSILLWPLVVYHELIQRmytr 235 human
XP_002126378 149 -----------------------------rFCGIFCFFCLCLNFIGSlVPGVLLAYTIMLCLLFWPLLWYNKILERtytq 199 vase tunicate
Q9H6L5       195 -----------------------------kFCLLVCSVCTFFTILGSyIPGVILSYLLLLCAFLCPLFKCNDIGQKiysk 245 human
XP_029841505 172 -----------------------------lFCILSSSTFAMTAVLGRmVSGVLILYSLLMAVTLGPGIALYVIPETwyeq 222 Ixodes scapularis
XP_029641602 147 -----------------------------rFCLTNTYICMNLAIVGCyVPGIIVSYIIGIIFLLCPPVIYYRVPQRfrqk 197 Octopus vulgaris
XP_013401821 184 eisryaaemwvtasvyshllwnmrkrhpgkFCILICTGSFCLAGIGHyIPGIMISYIIVMSILLWPCVVYHNLLQKfyih 263 Lingula anatina
Q86VR2       219 LKPALQRLDFSVRG 232 human
ELU13960     195 IQPYIADFEQKLNI 208 Capitella teleta
XP_030845916 214 LHPFLRQFEQSMDS 227 Strongylocentrotus purpuratus
XP_013071506 197 LEPGFIWIKGHFSK 210 Biomphalaria glabrata
XP_002591923 201 FEPLMMQLDYSMKT 214 Florida lancelet
XP_006814095 211 LEPVWMQLEYSMMR 224 Saccoglossus kowalevskii
XP_013407732 215 IEPMMMKMEYKLKI 228 Lingula anatina
Q8NC44       236 LEPLLMQLDYSMKA 249 human
XP_002126378 200 VEPFLMQLQYTLKQ 213 vase tunicate
Q9H6L5       246 IKSVLLKLDFGIGE 259 human
XP_029841505 223 IEALLRVASGKSPR 236 Ixodes scapularis
XP_029641602 198 LEPVTSRIMYVMSF 211 Octopus vulgaris
XP_013401821 264 IEPMMMKMEYKLKI 277 Lingula anatina
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