5CB3,5FUD


Conserved Protein Domain Family
YmdB

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COG2110: YmdB 
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 441713
Aligned: 718 rows
Threshold Bit Score: 59.0351
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5CB3_A        11 IHVVQGDITKLAVDVIVNAANPS-----LMGGGGVDGAIhRAAGPALLDACLKVrqqqGDCPTGHAVITLAGDLPAKAVV 85 
YP_003611038   3 LTVLPGDLFEQEADCLINAWNMNfipwwLLWPKGVSGRLkQLAGPEPFRQLART----GVMRPGTVCLTDGGKLK-TPII 77 
WP_013110162   6 VELVSGDLLKQPVDVIVNSWNRNfipwwLLLPQGVSGAIkRHAGTAPFRELSRA----GIMPLGSAVLTSAGRLHFRGII 81 
WP_013628421   3 CQLVQGDLLDQPVEVIVNSWNRNiipwwLLLPQGVSGAIkKRGGLAPFRELAKH----GSMPLGSAVLTSAGKLPYRGII 78 
WP_015217896 396 LIIEYESLTETNTEVIVNYIDKD-----LSFAEDINRIIsEAGGKNINRELKQEq----VKNLGQILITNGGQLRADKIF 466
WP_041099811   4 PNVIDGNLLDQPVEVIVNAWNRNiipwwLLVPQGVSGAIkKRGGYRPFIELGRL----GPIPLGGAVMTSAGRLPCKAII 79 
WP_077023222   3 VEVVDGDLLNQNVDVIVNAWNRNiipwwLLLPQGVSGAIkKRGGYAPFRELRKA----GPIPLGGAVLTGAGKLPFQGII 78 
WP_087461961   3 YEIVHGDILNQDVEVIVNSWNRNiipwwILLPQGVSGAIkKKGGTKPFKEVAKY----GPIPLGEARVTSAGTLPFQAII 78 
WP_096379878  13 PVIVDGDLLDQDVEAIVNPWNRNiipwwLLLPQGVSGAIkHRGGTRPFRELARV----GPIALGGAAITSAGCLPFKNII 88 
WP_106891872   4 AQIVDGDLLTQPVDVIVNAWNRNiipwwLLIPQGVSGAIkKQAGYQPFIELGRK----GPMPLGSAVATGAGRLPYRAII 79 
5CB3_A        86 HTVGpvwrggeQnEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL-PEQVYFVC 164
YP_003611038  78 HAAAlnmf--wcsSESIVHCCTDAALNLAAVKGFHSVAFPLLGSGIGGLTPSLSLEAMTRAIEINPYS--KtL-DIKIIT 152
WP_013110162  82 HVAGinl--cwLaSEYSIRQSTRNAVQLAEQQGFSSMAIPLIGAGSGGFPAEKARHLILDELTKLNLKSP--L-LVKVVT 156
WP_013628421  79 HVAGinm--lwRaSERSIRDSATNAMAIAEEQNFRSIAFPLIGAGSGGFNTQRAKEILLDQLSSISSRA-----EVTVVE 151
WP_015217896 467 HAVIydyhnhsltDRNLISTVISRCLNLSDSSGRNSIAFPFLSPVNSTVEVDEIGLIFAQEIVKYLEGNTk-LNSVKIIL 545
WP_041099811  80 HVAGism--lwRsSRESIQGSVASAMDLVNRHGFGSVAFPVIGAGTGGYRQADALALMLDAFSRVTSPA-----AVTVVR 152
WP_077023222  79 HVAGism--wwRaSERSIRDSVRNALALATQHNFQSIAFPLIGAGTGGGSEDKVLTMMQSELAECSFAG-----QVRIVR 151
WP_087461961  79 HVAGinm--fwVaTKYSVTHSVRSVIQEVRKNNFASVAIPLIGAGSGNRSEMWSLDLIKSELEHIECDA-----KVLIVR 151
WP_096379878  89 HVAGinm--lwRsSRRSIHDSVRSAMDIVAQNNIKSVAFPIIGAGSGGHDEEAALQLMLESFGEIGSAA-----EVLVVR 161
WP_106891872  80 HVAGinm--lwRaSAQSIQDSVRHSMAQVYTNGYESVAFPIIGAGSGGFPESSALALMQEALAPIETSA-----RVIFVR 152
5CB3_A       165 YDE------ENAHLYERLL 177
YP_003611038 153 YRK------GDAV------ 159
WP_013110162 157 FAV------EK-------- 161
WP_013628421 152 FAK------AKK------- 157
WP_015217896 546 QNYnqnkniTDEKLYRFYL 564
WP_041099811 153 YRG------QSMNPPALp- 164
WP_077023222 152 FRN------TNN------- 157
WP_087461961 152 Ya----------------- 153
WP_096379878 162 FRP------TKRC------ 168
WP_106891872 153 FRP------GIARR----- 160
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