6DS5,7OXP,6MLU


Conserved Protein Domain Family
Seipin

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cd23993: Seipin 
Seipin and similar proteins
Seipin is a homo-oligomeric integral membrane protein in the endoplasmic reticulum (ER) that concentrates at junctions with cytoplasmic lipid droplets (LDs). It acts as a cell-autonomous regulator of lipolysis essential for adipocyte differentiation. Seipin is predicted to contain two transmembrane domains at N-terminus and C-terminus, respectively. Human seipin, also called Bernardinelli-Seip congenital lipodystrophy type 2 protein (BSCL2), may contain a third transmembrane domain in the middle region. Mutations in the seipin gene underlie human congenital generalized lipodystrophy. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V. Seipin homologs from fungi, plants, and insects are also included in this family. There are three SEIPIN homologs in Arabidopsis thaliana, designated SEIPIN1, SEIPIN2, and SEIPIN3. Saccharomyces cerevisiae Seipin (Sei1) is also called few lipid droplets protein 1 (Fld1p). Similar to their animal homologs, plant and yeast seipins also play roles in lipid droplet (LD) biogenesis. Human seipin exists as an undecamer, and this oligomerization state is critical for its physiological function. In contrast to Human seipin, S. cerevisiae Sei1-mediated LD formation depends on Ldb16, a yeast specific binding partner. Sei1 forms a homodecameric ring that scaffolds and positions Ldb16.
Statistics
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PSSM-Id: 467827
Aligned: 3 rows
Threshold Bit Score: 189.814
Created: 27-Apr-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6DS5_A  69 PTVSHLS---PVHFYYrtdcdssttslcsfpvaNVSLTkggrdrv------------------lmygqpYRVTLELELPE 127 human
7OXP_A  49 SSNVVPLntfNILNGVqf-------------gtKFFQSiksipvgtdlpqtidnglsqlipmrdnmeykLDLNLQLYCQS 115 baker's yeast
6MLU_A  83 PAISHTR---PVHMQFktcletst--pctfphaHVSLTkkqqll--------------------mvgqaYKVIVNIDMPE 137 fruit fly
6DS5_A 128 spvnqDLGMFLVTISCYTrg-------------gRIISTSSRSVMLhyrsdllqmldtlvfsslllfgfaeqkQLLEVEL 194 human
7OXP_A 116 kt--dHLNLDNLLIDVYRgpgpllgapggsnskdEKIFHTSRPIVClaltdsmspqeie-qlgpsrldvydeeWLNTIRI 192 baker's yeast
6MLU_A 138 spqnlELGMFMVCAEMRDyd-------------sMLRGHSCRSAMMryrsplirmistwvlsplyvlgwkeefQQVPVEI 204 fruit fly
6DS5_A 195 YadyrensyvPTTGAIIEIHskrIQLYGAy-LRIHAHFTG 233 human
7OXP_A 193 EdkislessyETISVFLKTEiaqRNLIIHpeSGIKFRMNF 232 baker's yeast
6MLU_A 205 FsryleerqhPITDVYVEIQsqkIQFYTVt-LHIVADFTG 243 fruit fly
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