5DFZ


Conserved Protein Domain Family
VPS38

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pfam17649: VPS38 
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Vacuolar protein sorting 38
The class III phosphatidylinositol-3-kinase (PI3K) known as Vps34 (vacuolar protein sorting 34, encoded by PIK3C3) regulate intracellular membrane trafficking in endocytic sorting, cytokinesis and autophagy. Vps34 forms complexes with other proteins: Vps15 (encoded by PIK3R4, known as p150 in mammalian cells), Vps30 (encoded by VPS30/ATG6 in yeast, equivalent to mammalian Beclin 1, encoded by BECN1) and either Vps38 (UVRAG) or Atg14 (ATG14L). This family includes members such as Vps38 found in Saccharomyces cerevisiae. Vps38 is characteriztic of complex II and essential for vacuolar protein sorting. In mammalian cells, complex II is also involved in autophagy, receptor degradation and cytokinesis as well as signaling, recycling and lysosomal tubulation. Independently from complex I and II, Beclin 1 and UVRAG also play separate roles in endosome function and neuron viability. In complex I, Vps38/UVRAG is substituted with Atg14/ATG14L. Although the N-terminal domains of Vps30, Vps38 and Atg14 differ, the overall similarity of their domain organizations suggests that these proteins may have evolved from a common ancestor.
Statistics
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PSSM-Id: 435943
Aligned: 11 rows
Threshold Bit Score: 501.873
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DFZ_A         1 MKRFLLSRRQRHLRMICFHNIS--LFRANg-DSKlIKEYGDGF---IPC-FFILESIRGE-LLYVSEVQS-GSLRKLSFQ 71  Saccharomyces c...
XP_003678438   1 MAPYLIHRRLRHIRSISIHNLS--LFEND--SPYaKEHTIFHP---IPC-FISIQTLKKD-VLYVSEIQS-GSMQNIKFN 70 
XP_003681628   1 MPPYLLKRRLRHVRSIRIDNVSapVDKNPg-AQLr------PF---EAS-FIVLETLKGE-PLYVSEVQS-GFMHNIQFN 67 
XP_002495293   1 MGQYLLKRRLRHVRSVKISNLC--VGQRNs-QQLm------WF---PSY-FIVIENGKGQ-TLYVSEVQQ-GSLYSVQFN 65 
XP_004178139   1 MVRYLLSHRVRHVKSIAIHNIS--LIKKGisNPIkSNEINTNLfmtVPC-FFIVETLDGD-CIYISEVQS-YSSRCLQFN 75 
CCF56057       1 MATYLLEKKLRHVNSITLNNVClpIKKPI------ENLHIIRV---SRC-FFIIESFENDgVIYVSEIQSvNCARQVQFN 70 
CEP60628       1 M--YLSRRRLRHLSGISIYNVS--LTKDA------KSELKPPY---SPSiFVAIEDLHGR-CLYVSEAQK-RSQCGLRFE 65 
EJT43486       1 MKPFLSSRRQRHVRAICFHNVS--LFKANg-NSKfMKEHADGF---VPC-FFILKSIRGE-LLYVSEVQS-DSLQKLSFQ 71 
CCD27088       1 MPQYVSQRRLRHIRSISIRNLS--LLSLE--HPL-RESFPYLT---LPC-FFVIKTLKGD-TIYISETQN-GSTYNVQFN 69 
Q6FXH9         1 MPQYLLKRHLRHLKSISVNNIS--LIDESk-----KIGSRVGF---IPC-FIVLEDTRSRkPFYVSELET-GSLSSLHFT 68  [Candida] glabrata
NP_982939      7 PQPYLLHRRLRHLRSISVCNAS--LVRGDt-GLDmRW----RL---FPC-FVVVEDTHGR-VQYVSEVQE-GRHSVVRFN 73  Eremothecium go...
5DFZ_A        72 EL--PKLTGASTMIVLKLVGLVPSDILCTISSDKNgii-ddkWCVLCTYTIDLNKLQPI--NEDTVL---ITG---TNAP 140 Saccharomyces c...
XP_003678438  71 EL--PLNGNSLSHITLNIHVEIPDKLLNQKDDGQEka----sWCTLRSLYIDLNALKPV--NINDTS---IRS---LNTP 136
XP_003681628  68 EL--PHLEDPINHIVLKIAVKIPSRTELSSYVNENs------WLALRVYEVDLNKLQSV---NPNDL---IDS---YNAP 130
XP_002495293  66 EL--PPQDSPLTHFTLRLVAELPERLSPSPDEKL--------WFDFRTYKVDLNQVKHV---SADDI---IES---YNAP 126
XP_004178139  76 EL--PNFDCSLSGINLKIVCKLPSEILTITSKKDT-------WCILKEIVIDLNRLRPI---TDKDA---IQS---VNMP 137
CCF56057      71 DF--SLNGNPATCLCLKVVLEIPAEVTQDNTTS---------WMVARNINIDLNSLQAI--DSKNDI---VSD---YNVP 131
CEP60628      66 DI--PALPYAMTKIKLKIVGQIPQNLLEENEDLPV-------WTTLATYALDLSRLSPVlsDDEGNLspkTGN---VNVP 133
EJT43486      72 EI--PKLNGTSAMIILNLVGKVPSEILRSISLNTNtnv-ddkWCVLCTYKIDLNKLQFI--NEDAVL---ITG---TNTP 140
CCD27088      70 SL--PINSNPSTCVTVQLIVEISCKLFKTSGRDNEgenhenvWCPMATYEVDLNLLKKI--ELDNTI---IES---WNTP 139
Q6FXH9        69 ELviPKEFELCTLFEIKIAAKIPSFLLRHDEDEL--------WCFVAMHTVNLDELTYIgnQRDDHI---TME---QNLP 134 [Candida] glabrata
NP_982939     74 EL--PVLEAAESQVVLRLVGQLPEPEFAGE------------WAEVARQQVDLNALHYV---GHVEL---VDGlreLNVP 133 Eremothecium go...
5DFZ_A       141 VLDLIDGSYTLAAEKIKP--LKGLVSSHKRNISQVKIKFSLAYSSLLKLNKLLEYSSQVHEEINEISSKIEDDFLSLKNQ 218 Saccharomyces c...
XP_003678438 137 SLEMADGTYIMQGVKTKK--AVFFDQPHKRKISEPNMKRSFTFNSLLKMNKMLEYLARISEELQLTSAQLEKQMGVTARK 214
XP_003681628 131 LFEMTDGFYTLPGLPAAR--IVSDFSSHKRNVSNSRFVQSFSFNSALKVNKLIEYKTQVMIECSNSAAKVEEIILSNNRR 208
XP_002495293 127 VLELVDGDYVLPNVSMLTv-PKESIRTHKRANSSIKIKKSFTFNYALKLNKILEYTSQVMEESQQISERVERQIQDEHKR 205
XP_004178139 138 SFELCDGIYTLANVKLLNl-HNSTKRGHIRSKSSMKIKEVSSFNSLLKLNKALDYNKQINEEKQEFANRSESLIGNVDKK 216
CCF56057     132 TFNMIDQNEYIPSAHLIT---YRSPKNNESLVQNVDLKRSANFNDLLKLNRLLDYMGQISEETISISNKVDVHISGL-GI 207
CEP60628     134 VLHFSDGVFGTPGNFEVP---------PKITPEPVTPKKSFTFNGVLKLNKILEYWTQMHLELQELSEKIDDLVD--EKP 202
EJT43486     141 VLELVDGCYTLPTENVKP--IKEPIGLHKRNISEIKLKYSLAYSSLLKLNKLLEYSSQVHEEINEISTKIEESFPLHKNQ 218
CCD27088     140 IFEFEDGIYIIPDTKNKNilLQQNTQSHRRKISGTQTKKSVTFNSLLKLNKMIEYNMNMDRELLSDSVNLEKSVRLPNGR 219
Q6FXH9       135 MIEMIDGWYALPNKNIRY---TGLQISPVANMNNKNRKRMCPFNSLVKLSKLTQYTGDMVEEKQISTNKIERLIKSTHNI 211 [Candida] glabrata
NP_982939    134 VLEFADGHFAAARVPGRL---------ADGAPGKFPARRSFSFNALLKLNKILEYMSQVEKESQQLVRQAEALLGQSESK 204 Eremothecium go...
5DFZ_A       219 NHWYMRTVQKSIETLEKEVlqrkkSKKNIEMAQLESNDTIN--------------HSKTELSLMSQDESINDD-YGSIYS 283 Saccharomyces c...
XP_003678438 215 PSWHTTQLQIYKDQLNESL-----STKRIKIKRLKRSIEEEs-------------DDIIKPLTEGTDNRSKDE-YGSTFS 275
XP_003681628 209 DLWQIKCIARFKDELKRSM-----QEKTVNISILDGKIRP---------------ILKFNENEQADRQSLNDY-YGNTYP 267
XP_002495293 206 HQWFVTHLRDYNHQLKVRI-----QKKQLDLRRLRDSVE----------------HFAESEEKDSQPHSLNDY-YGNTYP 263
XP_004178139 217 EMWNIQELKMYIKQIKESI-----EKKNSIREHLEEVLGA---------------NLNSRVISTSSMENEVDYdYGNKSS 276
CCF56057     208 NQYHLSNVDTSKKVLRKGI-----SKKKLQVRQLKNELKIMqqsseeyendselvHSDTETNSDDKQFGNNDE-FGYFFS 281
CEP60628     203 KLLSKDALLHASESLELSI-----ERRLNKIQSLECSKQ----------------NGSTYHLDSSTELPMNED-YGVTLS 260
EJT43486     219 HKWYMKTVQKSIETLLTKT-----KKKSLEMTQLEKNGTIS--------------HSKTDVSLISQDESINDD-YGSIYS 278
CCD27088     220 LCWRKIQIIDAINQSKTSN-----LKKMNIIERLRSLLFKEnall-------kksVTELSLLSLNQNQSSKED-YGNTYS 286
Q6FXH9       212 GTGILDTYQENIKMIESRC-----EIKRQKLKRLKDQLSELd-------------DGNELNDVDSNIETYRDE-YANIYS 272 [Candida] glabrata
NP_982939    205 QLG--PGLDSAFGELEVQR-----KRKLAQLSALQD-------------------HACRLQANPDDEESFDSD-YGSMYS 257 Eremothecium go...
5DFZ_A       284 RFVQIKDRLDQLRFKKLYQLIGIFHSTDLFNSDRGYIYF---EKP-----SSVNDVINRLKLKPLNIEILLRQA-GESTK 354 Saccharomyces c...
XP_003678438 276 NLIQIRTQLERIKIKKLFQLLCIFQNTQLFSSDDEMVTL---DKTk----LTPTSIYEGITLSVIKKSTLQKLE-LGTED 347
XP_003681628 268 NLIQTKDRVDFLRIKRLSKLIGVFKETCLFRKDFRFISV---DED-----TSSRSLYERTSLNLIDKKRIIKMA-STNDA 338
XP_002495293 264 NLIQSRNRLESMRAKKLAQLIGIFQTTDLFHVRAGFVTF---NRTl---lDSSSSLYDRLTLDLLNKTKLLELAtDGSEA 337
XP_004178139 277 KLIHINNRLRIFNLLRFEQLINIFYYSKLFESNTKLITIr--DFT-----VSGENLYDRIHFHLLDTKKILKLL-NHSNE 348
CCF56057     282 EVNEKRNQLQYLRAKKYQQLIDIFQITGLFDPAHGLIEV-----------SYDENGERYLQFNTVDSVSFLKEI---NEE 347
CEP60628     261 DYTSALHRLQSLEERKVSQLLIAMKGTSLCG-QSGYVIP---N-------KKHQSIYE-MQLKRVEPFTAL------NDR 322
EJT43486     279 RFVQIKDRLDQLRFKKLFQLVGIFASTGLFDTTKGYIHF---EGP-----SSIDDVAAYLKLKPLDIGILFGQA-NESTK 349
CCD27088     287 GLIQTKTHLERIKVKKITQLIRIFENTGIFDEEFGFIRClktNNDhepqsFSSSSPYPKITLNRVDMKRLSSRI-SKSQE 365
Q6FXH9       273 KLSNAKEAIEKLQKKKLIQLINVFKNTFLFDKDVGLISFqfdD-------DEIEVEEFCKNLERVSIEQIYDRY-NEYPK 344 [Candida] glabrata
NP_982939    258 ELIQKKQRVHLLQERKLQRLIEIFTNTSLFSSPYVVVRT-----------STDSSPYD-ISLGKLELQTIL------DVD 319 Eremothecium go...
5DFZ_A       355 HREYVNSQLGYYLLFLHLTAIQIFKAPLPYRLMYYGSTSVIDSQYPLYFTDQMISKHQAKLIKAIHYFNADILQFKQILE 434 Saccharomyces c...
XP_003678438 348 DYTFFNARLGYYLLFIYVIANKIYKISLPHSLHYCGSTSIINYERPLHLVNSKNRKILKETEDAIDYFNKDILQTIQYLE 427
XP_003681628 339 ERELVNTCLGYYLIFIKLVATKVYDIPLPYSINYYGSTSLIGGDGALYLSDSAALKNPENFLEAMDKFNKNLIQIIQRWG 418
XP_002495293 338 SKKLTSTCLGYYTLFVTLIATSICSIPLPHELMYCGSTSTVNGTTPLYLDN---IKDIELLSQAIDCFNGNIIQVIQFLK 414
XP_004178139 349 DKNYINIHLGYYLLFVNLLTTTIWNIPMPYQMKYVGNRSLINRNYPLYFPEMINESNVDSFVKGMSFFNKNIIQVRQYLK 428
CCF56057     348 NKLELNAMLGYYLLFLKLISKKIYSLELPHKLMYYGSTSVINNIYPLYYPDVGSVKSLHKFSQAMKFFNINILQIRQYLT 427
CEP60628     323 DRILKNSTLGYYLLFVHILANKVFHTPLPHQLSFYGSTSLIDNALPLYLAASSTQQHLSDFDLAVERFNRNIMQVNQFLE 402
EJT43486     350 RREHINSQLGYYLLFLYLAATQIFKAPLPYKLMYYGSTSVIEGQYPLYFTDSMIARHQAKLIRAIRYFNANILQFKQFLE 429
CCD27088     366 DREIISSMLGYYLLFIKLITSKIYKIALPYNLQYFGSTSLIDGKYPLYCPKSNDMDQYRDFKNALNHFNVDISQTIQYLD 445
Q6FXH9       345 SVKIINAMLGFYSLFIVIYSYRIIQRKLPFDIVFQGSETIVGRKYRLSFPESRSTKSKEEFHIALRAFNENIMQFTQYLG 424 [Candida] glabrata
NP_982939    320 DRISINTILGYYLLFLDILAGKICYIPLPHRLAYYGSTSIIDNKFPLYLPTSSTQHHLDRFSEAVHLFNINIIQVRQFLN 399 Eremothecium go...
5DFZ_A       435 NY 436 Saccharomyces cerevisiae S288C
XP_003678438 428 HH 429
XP_003681628 419 HH 420
XP_002495293 415 HR 416
XP_004178139 429 YR 430
CCF56057     428 KH 429
CEP60628     403 CH 404
EJT43486     430 NY 431
CCD27088     446 HY 447
Q6FXH9       425 HI 426 [Candida] glabrata
NP_982939    400 NL 401 Eremothecium gossypii ATCC 10895
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