Conserved Protein Domain Family
KORA
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pfam16509: KORA 
TrfB plasmid transcriptional repressor
KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts the DNA via the helix-turn-helix region at the N-terminus.
Links
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Statistics
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PSSM-Id: 435386
Aligned: 6 rows
Threshold Bit Score: 106.817
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_014607067       7 LTAKEFETLRPYLsRLKERNVEAIRQIMVESRQQTDVADELGVTKKAVSQMVGKAWQAHIEHGeRPAGWTSISVTLPPDM 86  Xanthomonas...
Q5NWB5            10 LTEAQFLEAIKGL-EIGKQTREIAWGVLVEGKKQAGYVTALGVTKGAVWQAVERVWGAHITKA-IPDGFERVTAVLPEHQ 87  Aromatoleum...
WP_008929989       5 LTESQFQAAIKGL-GVGQQTLEIAHGVLVEGKTQAEFVALLGVTKGAVNQAVKRVWDAHKA-L-TPEGFERVTAILPEHQ 81  Gammaproteo...
jgi:CAP2UW1_4614   5 LTERQFQEAIKGL-DVGAQTLEIARGVLIDGKPQKEFATALGLSRGAISQAVNRVWAAHDERN-LPAGYVRVSAILPEHR 82 
Q2SG87             1 MTEEQFRIAISGM-ELAESNRIIAHDLLVKHVRRKLIVRRTGLSNTRIGQIEKNVLANYAKRL-EALGLVRVEVLVSPEN 78  Hahella che...
CAZ15862           6 MTAAEFESIQPRLgRLTVDTVQIARRVLVEGKSQAQIAEETGLTRQRISKMVQRVMSAANE---FPPDWERVDEWMPPEL 82 

WP_014607067      87 AELVKD 92  Xanthomonas albilineans
Q5NWB5            88 AFIVKK 93  Aromatoleum aromaticum EbN1
WP_008929989      82 AFIVKK 87  Gammaproteobacteria
jgi:CAP2UW1_4614  83 AFIVKK 88 
Q2SG87            79 VAQVRA 84  Hahella chejuensis KCTC 2396
CAZ15862          83 AMRVRA 88
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