Conserved Protein Domain Family
bHLH_AtIBH1_like

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cd11444: bHLH_AtIBH1_like 
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana ILI1-BINDING BHLH 1 (IBH1) and similar proteins
The family includes several bHLH transcription factors from Arabidopsis thaliana, such as IBH1, UPBEAT1, PAR1 and PAR2. IBH1, also termed bHLH zeta, or AtbHLH158, is an atypical and probable non DNA-binding bHLH transcription factor that acts as transcriptional repressor that negatively regulates cell and organ elongation in response to gibberellin (GA) and brassinosteroid (BR) signaling. IBH1 forms heterodimer with BHLH49, thus inhibiting DNA binding of BHLH49, which is a transcriptional activator that regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. UPBEAT1, also termed AtbHLH151, or EN 146, is a bHLH transcription factor that modulates the balance between cellular proliferation and differentiation in root growth. It does not act through cytokinin and auxin signaling, but by repressing peroxidase expression in the elongation zone. PAR1 (also termed AtbHLH165, or protein helix-loop-helix 1, or protein phytochrome rapidly regulated 1) and PAR2 (also termed AtbHLH166, or protein helix-loop-helix 2, or protein phytochrome rapidly regulated 2) are two atypical bHLH transcription factors that act as negative regulators of a variety of shade avoidance syndrome (SAS) responses, including seedling elongation and photosynthetic pigment accumulation. They act as direct transcriptional repressor of two auxin-responsive genes, SAUR15 and SAUR68. They may function in integrating shade and hormone transcriptional networks in response to light and auxin changes.
Statistics
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PSSM-Id: 381450
Aligned: 25 rows
Threshold Bit Score: 53.3952
Created: 1-Nov-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Arabidopsis thaliana MYC2 (5GNJ) binds DNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##  ## ##   #                   ##                         
Q9SKX1        95 KRRRSNQRAPVVEEAAERLRNLVPGg---gGMETSKLMEETAHYIKCLSMQVKVMQCLV 150 thale cress
KYP57494     108 DLGIEDDEDEDMKKQWKRLRRLVPGg---eEMCDEQMAAELQSYISCLQMQVNALQFLL 163 pigeon pea
ONL97391      19 IGERDMVEDPRLLKQVRELRRLVPAcr--ePCGLGELFQDTATYIEDLQAQVQVMRMLL 75  Zea mays
EFJ31208     106 NEDNESEIDNAIERQLRVLRRLIPDg---nKFHNEEMLDKAIEYVHFLQRKIQIFESKW 161 Selaginella moellendorffii
PIA46097      16 LKKQRKTTESLMQRKMKQLQRIVPEcnkmdDIEIDTVFQKTATYIFFLECQKKFFYFFP 74  Aquilegia coerulea
APR64216      15 AKKKVKLVKFSLKRNISTLQKMIPGc---eEADVETLFQKSIDHIMKLKLQVHILKCLL 70  Populus tomentosa
EOA14845      74 RKEKSNFGESYTQRNLGILRRIVPGce--eIEDEEALFRKSIEHVMLLKSQVTLLRKIA 130 Capsella rubella
Q9LXR7        48 DVEDEDEDEEGVEEKIEALQTIVPGg---tELGVDALFEETASYILALQCQINAIKVLT 103 thale cress
Q9SJH0        48 DREEAEEEEDEVKEKIEALQRIIPGg---aALGVDALFEETAGYILSLQCQIKTIKVLT 103 thale cress
NP_001320853  37 KKTGRGSGSRSIHIKMRKLRVLIPGgr--rLNQPDLLLSKTADYIMHLELRIRFLKAIS 93  thale cress

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