6U5H


Conserved Protein Domain Family
Phage_GPD

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pfam05954: Phage_GPD 
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Phage tail baseplate hub (GPD)
This family includes a number of phage late expression gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences. This protein forms the phage central baseplate hub.
Statistics
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PSSM-Id: 428689
Aligned: 73 rows
Threshold Bit Score: 65.7954
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6U5H_C                32 GMEsDSLTLRID-------DRDGQVALP--RRGAVLEVHL------------------------GYAGEPl---MRMGRf 75   Pseudo...
ACR31037              43 EMN-TPFVADITvt----sKDKHIDGAA--VIGRPAIFSIeehasvpslpglinpvqqatrtvhGIVTQW----TRVKT- 110 
wugsc:KPN_02273       36 KLS-ELYYYTITft----sAEKNIDAAQ--LLSKPAMLTMgggalqql---------adckrvhGVVTAF----RRISS- 94  
Q9PAL7                32 esgshADTLEVVla----dHLPNAPLKLp-PMGAELELAL------------------------GYDGQL----RPMGVf 78   Xylell...
Q63LB9                56 sdEaDTIDIVLD-------DS-KNDLDIp-KRGATIKASI------------------------GWAGEPl--vD-KGSf 99   Burkho...
P10312                44 GFEaDQLDIELN-------DADGQVGLP--VRGAVLTVYI------------------------GWKGFAl---VCKGKf 87   Escher...
goetting:EBL_c29800   55 SLEsIAGEFDLTit----aRWSAAAPRSi-KPGQSCTVSVgndr-----------------vmtGYIDDF------IPSy 106 
LANL:CH59_597         25 SIEkLPSSFELSlmdrypaSG-GQ---QwvNPGDPCVVKLgnds-----------------vlnGYIDSW----DNAIT- 78  
CAN95830              26 AIS-RPYQIEIFlll-qgeDAESLDLPD--AVGAKASLVLdwpkdnv-----------ppfvfaGVLATVgvlhEL---- 86  
Q63K62                47 AIS-QPYRFEITlv----sRQLRIDFAK--MLSRGATLAIlppfgea-----------gttryaGVLAEF----EQKKR- 103  Burkho...
6U5H_C                76 tvDTL-QWAgppDCLTVTAKAGDMrg-----sGKT-IRSGG------WEG-TTLAQVCRDVGA------Rn---gWRV-E 131  Pseudo...
ACR31037             111 --SRD-EAT---YQLHLKPRLALL--------EQV-HDSAV------FLD-RSFRELLTDTIV------DrdlfqSYDvE 162 
wugsc:KPN_02273       95 --SED-QSK---YQITLEPFLSLL--------DKQfRSHRF------FVN-KSVPEVVEQVLQehhlhdWeyefnLKQ-H 152 
Q9PAL7                79 vcSEIqLSGw-pATMTLRAHAAPWegtpkgksDLQtQKTRS------WPAgTTLGAMLSTMAA------Eh---gMTS-A 141  Xylell...
Q63LB9               100 vvNEVeHSGa-pDIITIRARSAAMt------sGMQeRREKS------WHR-QTIGSIVHAIAG------Ry---sLAP-I 155  Burkho...
P10312                88 tvDEVeHRGa-pDVVTIRARSADFr------gTLNsRREGS------WHD-TTLGAIVKAIAT------Rn---rLEA-S 143  Escher...
goetting:EBL_c29800  107 --DAE---N---VSLRVMGRDKTG--------DLV--DSSVvdkagqWKG-LKLEQLASTIAK------Py---gIEV-I 157 
LANL:CH59_597         79 --ATT-------HVVSAMGRGKCQ--------DLV--DCSAkwpnsvISQ-STVLQIAQKLAE------Py---gITV-T 128 
CAN95830              87 --DGR-SLL----RAVLVPKLWLL--------GLS-RRSRI------FTK-LSLPDVMKAVLEengigpDeyemrLGS-- 141 
Q63K62               104 --FRD-FTV---YRATLVPRLWRL--------SLY-KASDV------YLNeQTIPDIVKRVLRaasfgsRdf--rMRHgg 160  Burkho...
6U5H_C               132 cp---lQVAIARVDQVNESDYHFVTRLARQYDCTAKLAE---------GMLMVLPrQSG--Q-SatGRRIEPLVLGRad- 195  Pseudo...
ACR31037             163 feldglDAKLHQTVMYEETIANFIDRHCRRAGVFYYFKHakkedgpqrDTLVFSNtARGymR-A---LEVPLLPNSGlvs 238 
wugsc:KPN_02273      153 ------YPRREQINQYQESDLAFIQRLLAEVGIFYFFTLqee---aqsEVVHFADaQRAlmF----DKTLPVNSPSGmsd 219 
Q9PAL7               142 ispslsGVALPHIDQTEESDINVLLRLAQRYDAIAKPAG---------GRLIFAKrGES--K-SvtGIDMPRITLTPde- 208  Xylell...
Q63LB9               156 vgdalaRILIAHIDQTHESDMSFLTRLAKRYDAVMNVKD---------LRLLFMPiGTG--Q-TasGKQLDVLELTRas- 222  Burkho...
P10312               144 vapslaGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKM---------GKLLFLKaGQG--V-TasGKKIPQVTITRsd- 210  Escher...
goetting:EBL_c29800  158 netdtgDAFGSITLEQGETGFELLDRLAKQRGVLVTsd--------awGRLIITRaSTQr------AGVALVLGENIlaa 223 
LANL:CH59_597        129 sditdmTIVPTFTLNWGETAQTVIENVTRWAALLYYdq--------ldGNLLLTRvGNR--K----AASGVAQGVNIlsa 194 
CAN95830             142 ------YEVEEHICQYRESDLDFLARWMEREGIFYFFEHtp-----dgDKVIFCDa-KSyeE-DpiGEPVRYHPQLGydv 208 
Q63K62               161 -----gYRKRSFVCQYDESHLDFVSRWMEKEGLYYYFEHdg-----rhETLVIVDdRRHq-PgPadDLALRYLPATSlda 229  Burkho...
6U5H_C               196 -------vGSFDVTFDDRSLMRTVKTRYQLPGSGEVKsv-------------------------------eLKNPKapat 237  Pseudo...
ACR31037             239 -----wheAILELNVTRSLVPQTVREWDHNYRQPDGPlqv-----------------------------esVVAEKgdrs 284 
wugsc:KPN_02273      220 s----gteSIWGLSITHNVVEANVTTRDYNPRDAQSVlq------------------------------saTADMTrgng 265 
Q9PAL7               209 -------iASWQMTYATRDSPGTVVAFYRLARRAELH----------------------------------QVSVGdgh- 246  Xylell...
Q63LB9               223 -------gDSHRYHVSERENYAAVRAHYHSTGRAKRK----------------------------------SVIVGgenn 261  Burkho...
P10312               211 -------gDRHHFAIADRGAYTGVTAKWLHTKDPKPQkqkvklkrkkkekhlralehpkakpvrqkkapkvPearegeym 283  Escher...
goetting:EBL_c29800  224 rgrfswreRASQYI----VKGSSSAGGSTWDEQPVKV----------------------------------VGGRqivv- 264 
LANL:CH59_597        195 s---lhtdINKRFVDYTGVVLSTNAVARRSPSGGNNT----------------------------------SVLVRvqdt 237 
CAN95830             209 s----agmSLRTFTSQHTTLPAVIKLKDYDYARPNLS----------------------------------VAGSArvsp 250 
Q63K62               230 g---ieadRVQAFTCRATPLPREVVLRDFNHRKAELS----------------------------------LEVRErvar 272  Burkho...
6U5H_C               238 a---mgehvDR--HLY--------TSR----------GEAEQAAKARL--ASFSRSSASVRL--ELPGRGd--------L 282  Pseudo...
ACR31037             285 vy--gsvncSI--EHF--------HSA----------EEGQVLADARR--DELITRQTRISG--KSNVMG---------M 329 
wugsc:KPN_02273      266 e---gitygEV--YHYk------lRHRergdkidpqtETANFYARLDH--ERFLAHQTLITA--ISTAAW---------L 321 
Q9PAL7               247 ------pvhRI--KQYl-------PDA----------AAAIAAARGEL--SRRARAETKLTLe-MAGRAE---------L 289  Xylell...
Q63LB9               262 k----nvkvLP--EDY--------ATE----------AEARAAAQAEF--KRMQRSQATMSYtlARGRAE---------L 306  Burkho...
P10312               284 ageadnvfaLT--TVY--------ATK----------AQAMRAAQAKW--DKLQRGVAEFSIslATGRAD---------I 332  Escher...
goetting:EBL_c29800  265 ------sdpEI--TRYrpkilvneDSL----------TVGGASARGEW--YKTRMLGESNTT--EITVAGwrengvsgpL 322 
LANL:CH59_597        238 q----laalLP--DRYrnri-vivENT----------MDSPQLVETSIdwEINRSVGRAKVL--TVQVDSwrdr--eqqL 296 
CAN95830             251 -----ngagEVslYGEr------fFTP----------AAGDRLAKIRA--EELLARQVLYQG--AGTRLH---------L 296 
Q63K62               273 dg-vgervsSD--EHF--------HTK----------DEGQRYAKLRA--EALVCEGRRFAG--ESTAAG---------L 318  Burkho...
6U5H_C               283 -FAERSLLLQG-F----KAgiDG-EFLIDSVEHTYSSS 313  Pseudomonas aeruginosa PAO1
ACR31037             330 -MPGMVVRVINdT----VPeaPH-GIVITKLVTTGSRK 361 
wugsc:KPN_02273      322 -APAQVLTVTDsLpstlPApvQD-PLLITGTGFTASRR 357 
Q9PAL7               290 -SAEAVLTLNG-W----REgvNG-DWLVTRVQHCLDKN 320  Xylella fastidiosa
Q63LB9               307 -FPEMPVTVSG-F----KPeiDEtPWLVKKTTHTIGDv 338  Burkholderia pseudomallei
P10312               333 -YTETPVKVSG-F----KRviDEqDWTITKVTHFLNNS 364  Escherichia virus P2
goetting:EBL_c29800  323 wQINRLVKVTDa-----IQqlDV-TWLIKTVSFMEGDG 354 
LANL:CH59_597        297 wEINSLIPIDIpA----LGlrDE-LWLLSEVVYQkdak 329 
CAN95830             297 -RPGYTFELDEhPr----AafNA-KHLTIEAHHHGNQL 328 
Q63K62               319 -RAGRFFALSGhY----RQdfDG-RYLVTALTHRGSQa 350  Burkholderia pseudomallei
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