1YCQ,1UHR,2LZG,2Z5T,1V32


Conserved Protein Domain Family
SWIB-MDM2

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cd00855: SWIB-MDM2 
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SWIB/MDM2 domain family
The SWIB/MDM2 protein domain, short for SWI/SNF complex B/MDM2, has been found in both SWI/SNF complex B (SWIB) and the negative regulator of the p53 tumor suppressor MDM2, which are homologous and share a common fold. The SWIB domain is a conserved region found within proteins in the SWI/SNF (SWItch/Sucrose Non-Fermentable) family of complexes. SWI/SNF complex proteins display helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). MDM2 is an inhibitor of p53 tumor repressor. It binds to the transactivation domain and down-regulates the ability of p53 to activate transcription. This family corresponds to the SWIB domain and the p53 binding domain of MDM2.
Statistics
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PSSM-Id: 349487
Aligned: 19 rows
Threshold Bit Score: 69.1764
Created: 11-Apr-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1YCQ, Xenopus laevis MDM2 binds the transactivation domain of human p53, contacts at 4A.
  • Structure:2Z5T, Danio rerio Mdmx binds to p53 at 4A distance
  • Citation:PMID 8875929

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     #  ## ##  ##    #    ## #                           
1YCQ_A         14 PTPLLLSLLKsaga-------qketFTMKEVIYHLGQYIMAKQLYDekqQHIVHCSn-dPLGELFGVQEFsvke------ 79   African clawe...
1V32_A         16 GSRQLIEFLHslgkd------tsemISRYDVSDTIAKYISKEGLLDpsnKKKVVCDk--RLVLLFGTRTIfr-------- 79   thale cress
EOB14256      118 LSVEIFEWNKtd-----------neSINSFELRTLWKYIHKNGLIKp-gEIEIKADd--KLKKLVNKDKFlf-------- 175  Nosema bombyc...
OAO15449      416 VSSELQAITKqs------------eCSGKEILSSVWKYIHDNHLIQrsdPETVVLDd--TLAALAEAPTLsi-------- 473  Blastocystis ...
XP_005539221  326 LSPELVALLGve------------qDTLAGVLTTFWHYIRRQGLMHperPGFVLLNe--ELRRIFGWSKHeptsaheshq 391  Cyanidioschyz...
XP_013757038  189 ASKELEALTRma------------gGTRTALLSAVLDYVREKGLLApgsREDVLADe--RLRAVIGMPQIkv-------- 246  Thecamonas tr...
CEM09781      671 LSDEVQAILGie------------gGILDVILKRFRDHCQSKNLMMpghPNVVLCGadeQLEQLFHCHSLki-------- 730  Vitrella bras...
KUF86597      165 ISPELEAAIGqylg-------pakaYTKQDIVLAMWEYIKLRNLIKaddCRVVQCDd--RLLKVLNCVSLpf-------- 227  Phytophthora ...
CCA24460      168 LSPELKHVVWerlqgnsqnltnvdaFTKKDILVAFWEYVFHKNLMKeddPSVLRCDe--KLRVIFNECKIvpy------- 238  Albugo laibac...
XP_009829622  197 LSPDLFNAISpyltpn---cgpddtFVKADISFALWQYIKEKDLMKtddCRVISHDe--VLQRVFECHEQpi-------- 263  Aphanomyces a...
Feature 1                                          ##      
1YCQ_A         80 ------------------------------prrLYAMISRN 90   African clawed frog
1V32_A         80 -------------------------------mkVYDLLEKH 89   thale cress
EOB14256      176 -------------------------------tdIPEIITDH 185  Nosema bombycis CQ1
OAO15449      474 -------------------------------yeVTNCINKH 483  Blastocystis sp. ATCC 50177
XP_005539221  392 enerspnlprperteepiddafegsvpmmplhvIGERLREH 432  Cyanidioschyzon merolae strain 10D
XP_013757038  247 -------------------------------adLPKAIKPH 256  Thecamonas trahens ATCC 50062
CEM09781      731 -------------------------------gdVQHHLKAH 740  Vitrella brassicaformis CCMP3155
KUF86597      228 -------------------------------tsIVVALKQH 237  Phytophthora nicotianae
CCA24460      239 -------------------------------ssIIIALERH 248  Albugo laibachii Nc14
XP_009829622  264 -------------------------------haIMGSLQTK 273  Aphanomyces astaci

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