Conserved Protein Domain Family
FH_FOXN4

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cd20057: FH_FOXN4 
Forkhead (FH) domain found in Forkhead box protein N4 (FOXN4)
FOXN4 acts as a transcription factor essential for neural and some non-neural tissue development, such as retina and lung, respectively. During development of the central nervous system, FOXN4 is required in specifying the amacrine and horizontal cell fates from multipotent retinal progenitors, while suppressing alternative photoreceptor cell fates. In non-neural tissues, it plays an essential role in specifying the atrioventricular canal and is indirectly required for patterning the distal airway during lung development. The FH domain is a winged helix DNA-binding domain. FOX transcription factors recognize the core sequence 5'-(A/C)AA(C/T)A-3'.
Statistics
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PSSM-Id: 410831
Aligned: 6 rows
Threshold Bit Score: 218.424
Created: 18-Dec-2018
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                 ##  #                  ## ##  #      #          ### 
Q96NZ1       188 PKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKtapdGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCL 267 human
A2BGM5       226 PKCFPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKtapdGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCL 305 zebrafish
Q3BJS1       185 PKSYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKDHFLYFKtapdGWKNSVRHNLSLNKCFEKVENRLSGSSRKGCL 264 African clawed ...
XP_014349114 192 PKTYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKtapdGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCL 271 coelacanth
NP_001076828 190 PKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKtapdGWKNSVRHNLSLNKCFEKVENKMSGTSRKGCL 269 chicken
NP_001279572 192 PKTYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKtapdGWKNSVRHNLSLNKCFEKVENKLSGSSRKGCL 271 elephant shark
Feature 1        #                         
Q96NZ1       268 WALNLARIDKMEEEMHKWKRKDLAAI 293 human
A2BGM5       306 WALNPAKIDKMEEEMQKWKRKDLPAI 331 zebrafish
Q3BJS1       265 WALNPAKIDKMEEEMQKWKRKDLPAI 290 African clawed frog
XP_014349114 272 WALNPAKIDKMEEEMQKWKRKDLAAI 297 coelacanth
NP_001076828 270 WALNPAKIDKMEEEMQKWKRKDLAAI 295 chicken
NP_001279572 272 WALNPAKIEKMEEEMQKWKRKDLPAI 297 elephant shark

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