Conserved Protein Domain Family
SLC5sbd_u2

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cd11478: SLC5sbd_u2 
Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain
SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.
Statistics
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PSSM-Id: 271372
Aligned: 16 rows
Threshold Bit Score: 551.508
Created: 15-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Na binding site
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       #  #                             
YP_644805     18 VDYLIIGIYFLFVLGIGALLRDKMRTSEDYFLSGRsLPSWVTGLAFLGANLGALEILGMGAGAAQYGLmqahFYWIGAIP 97  Rubrobacter xyl...
YP_001837663   8 IDTLIVFVFVGFMVVIGVLLKKSMNHSTDFLLAGRkIPSWITGIAFISANISALELLGMSASGAEYGFltfhFYYLGAIP 87  Leptospira bifl...
YP_822512     25 VDLAIIVLYFAAVLGIGFYLKRFTKTGEDFFLAGReMTAWIAGLSFLAANLGSLELMGWAASAYQYGIlathWYWIGAIP 104 Solibacter usit...
NP_824754     28 LDYTILAIYFAVVLGIGFAARRSVKTSLDFFLSGRsLPAWVTGLAFIAANLGATEILGMAATGAQYGVavvhWYWIGAIP 107 Streptomyces av...
NP_939374     12 VDYLLVALYFVFVLGIGWAAKARVSSSIDFFLSGRgLPAWVTGLAFVSANLGAVEIIGMSANGVQYGFqtmhYFWIGAVP 91  Corynebacterium...
EED06923      10 VDYIIILVYFAFVLGVGFVLRNRVRTGEDFFLSGRsIPAWITGLAFLSANLGALEILGMTASGAEYGMltthFYWIGAIP 89  Alicyclobacillu...
EFL24212      10 VDWFLLAVYFGAIIAIGLYTKRAVRTTGDFFLAGRsMPAWITGLAFISANLGALEIIGGAANGAQYGAaavhFYWLGAIP 89  Streptomyces hy...
EEZ78337      10 FDYSFVVVYLFFVIAIGVVTKRKVLTSEDYFLSGRsLPAWICALAFLSANIGATELIGMAANGSQYGLatvhYYWIGAVP 89  Actinomyces sp....
ADF52824       5 IDYFIVIAYIVGMLLLGLYFKKFVNSSEDYFLGGKsLPFWAIGMSIVVSDIGALDFVGVSGQAYRYGIsvgnFDWVGSVP 84  Zunongwangia pr...
YP_887992     26 IDYLLIAIYFVFVLGIGYVARSQISTSLDFFLSGRrMPAWVTGLAFVSANLGAIEIMGMSANGAEIGLstmhYYWIGAVP 105 Mycobacterium s...
Feature 1                                                                                        
YP_644805     98 AMVFVALFMIPFYYGSRvhsVPGYLKLRYNEATRGFNAVLFAIFMILLSGINMYAMAIVFKLLLGWSLTASILLSAAITM 177 Rubrobacter xyl...
YP_001837663  88 GMIFLGIFMMPFYYSTKirsVPEYLRYRFNREAHLVNSLITLLSLALGSGIYLYSLSLVFETLFGWNPHLSILFSALIVL 167 Leptospira bifl...
YP_822512    105 AMLFLGIVMIPFYYISKthsVPGYLKLRFGEPARALSAISFGLMTVFMSGINMYSMALVMKVVLGWDIHVSIWISSITVM 184 Solibacter usit...
NP_824754    108 AMVFLGLVMMPFYYGSKvrsVPEYLLQRFDKPAHLLSSVLFAFAAILIAGVNLYALAIVVEALLGWPQWVAIVVAGFLVL 187 Streptomyces av...
NP_939374     92 AMVFLGIVMMPFYYGSKvrsVPEFMRRRFGSAAHLVNAVSFAVAQLLIAGVNLFLLAKVVNALLGWPLWVALVLAAVIVL 171 Corynebacterium...
EED06923      90 AMLFLGLYMMPFYYVSKvrsVPEFLKLRYNEATRALNAIAFAVMTVLTSGISLYSMALIFQILIGWSFDTSILVSALVVL 169 Alicyclobacillu...
EFL24212      90 AMVFLGVVMMPFYYSTRvhsVSEYLRRRFNNQTHLLNSVVFAIAQMLLAGVNLFALALIVKLLIGWPLWLSIALSAVFVL 169 Streptomyces hy...
EEZ78337      90 AMVFLGLIMMPFYYGSKvrsVPEYLRLRFDRPTHVYQSAVFAIATILVAGINLFALALLINVLIGWPLWASIIAAAGVVL 169 Actinomyces sp....
ADF52824      85 AMLLAAFIFIPYFWRGGmytIPEYLGRRYNKSVRTIASITWILFFALDLGVLFWASAVLLNVLMGWPIWISIISTAGVVG 164 Zunongwangia pr...
YP_887992    106 AMVFLGIVMMPFYYGSKvrsVPEFMRRRFGPGAHLVNAISFAVAQVLIAGVNLFLLATVINVLLGWNQWLSLIVAALIVL 185 Mycobacterium s...
Feature 1                                                                                        
YP_644805    178 AYILLGGLSSSIYNEVLQFFLITLGLVPLVVFALIDvGGWaGLQEAVDREGyfhlw-------------ahtgtTDNPMa 244 Rubrobacter xyl...
YP_001837663 168 IYTYFGGLSSSIYTEVMQFFLTVIGLFPLVIIGLTKlGGWdGLMQKIPESHkhmwvg------------lpggqNELGWd 235 Leptospira bifl...
YP_822512    185 LYVGLGGLLSAIFNEVLQFVLIWLGAMLISIIGLIEaGGWdGMVAKIHANFpqgdytha--------wrtlgsfNDNPMg 256 Solibacter usit...
NP_824754    188 AYITVGGLSSAIYNEVLQFFVILAALIPISVLGLKKvGGWdGLSDSLTKSHgdnflsa---------wggtgigDPNPLg 258 Streptomyces av...
NP_939374    172 SYITLGGLSAAIYNEVLQFFVILAMLLPITIIGLNRvGGWqGLKEQVAIEHnfhtwp-----------gveisgFDNPVi 240 Corynebacterium...
EED06923     170 IYVALGGLTSSIFNEVVQFFLIWAGLLPIPLIGLHNlGGWqGMMSRLPAGFghlwa-------------nlgspSHNPMg 236 Alicyclobacillu...
EFL24212     170 AYITLGGLAGAIYGEVLQFFVILAGLIPIVVIGLHTvGGFgGLKDAVQDPTllhtwq-----------gtapghWTNPLg 238 Streptomyces hy...
EEZ78337     170 LYTTMGGLTATMYNEVLQFFVIVAFLIPLTVGGLIRvGGIdGLLETIRTHEllgenglsv------wggtglanTTNPYg 243 Actinomyces sp....
ADF52824     165 LYTYFGGITAVIMTDVVQFIIMFIGGFALVFLSLYKvGGWdSMVEKIGAMGpeyqshfd-------iiqpqdtnSPFPWt 237 Zunongwangia pr...
YP_887992    186 TYTALGGLSAAIYNEVLQFFVILAFLVPLTIFGLIKvGGWsGLKDKVIDTMsdgavtasvdeqlttwpgqalsgFSSPVw 265 Mycobacterium s...
Feature 1                                                                                        
YP_644805    245 vrwfgIVLGLGFVLSFGYWCTDFLVVQRALAAEdAAAAQRTPLIAAFPKLLYGILAIFPGLVALTIvpnlgqggg----g 320 Rubrobacter xyl...
YP_001837663 236 v--lsVTVGLGFVLSFSYWTCGFAEVQRAMAAKdFRAARRTPLIGAMFKLFLPFLTVIPGLIALAEystemn-------- 305 Leptospira bifl...
YP_822512    257 inwvgIVFGLGAVISMGYWTTDFLVVQRVISAKdLRAAKLAPIIGAAFKMCVPFIVILPGLLGLAVlpehllpesqalat 336 Solibacter usit...
NP_824754    259 anwltIILGLGFVLSFGYWTTNFAEVQRALSAKnLSAAQRTPLIAAFPKIFIVFLVMIPGLVAAVLvpkigtsg------ 332 Streptomyces av...
NP_939374    241 sv-igITFGLGFVLSFGYWTTNFVEVQRAMASEsISAARKTPIIGAFPKMFVPFLVVLPGMVASVTvaeligdn------ 313 Corynebacterium...
EED06923     237 igwlgVVLGLGFVLSFGYWTTDFLVVQRTLAAKdLRAAQLTPIYAAFFKMIVPILVIIPGLIALAIfpkighsp------ 310 Alicyclobacillu...
EFL24212     239 dw-igLAMGEGFVLAFGYWTTNFAEVQRSLAAKdLNSARRTPLIAAFPKMALPLFTVVPGMIALVIipklgqpg------ 311 Streptomyces hy...
EEZ78337     244 nw-iaLLLGMGFVNSFGYWTTNFTEVQRALSAKdMSAAQRTPIIAAIPKMLLPAIIIMPGLIAAVLipelsng------- 315 Actinomyces sp....
ADF52824     238 ----gILFGLTFVMANAYMIGNQSIVQRCLTAKnEWHAKASMIFGSALKMFIPILVLFPGLMAVVVhpels--------- 304 Zunongwangia pr...
YP_887992    266 sv-igIVFGLGFVLSFGYWTTNFVEVQRAMASDsISSARRSPIIAAFPKMFIPFVVVIPGMIAGAVigdvvhlkst--gs 342 Mycobacterium s...
Feature 1                                       #  ##                                            
YP_644805    321 lansynmaIPYAMAHYFPSGMLGLGLTALLAAFMSGMAGNVTAFNTVWTYDIYRSYIRRDAPDRHYLNMGRIATVAGVVL 400 Rubrobacter xyl...
YP_001837663 306 --geynksFLILLKNFYPSGMLGLGTSALLAAFMAGMSSSVTAMNTIFTYDIYQTYINKDKDDKTYLRIGKQSTMVAVIF 383 Leptospira bifl...
YP_822512    337 gghsynevLPIMLARYCGPGLLGLGITALIAGFMSGMAGNVSAFATVWTYDVYRAMFNKNATDSHYVSVGRWCTFWGVLA 416 Solibacter usit...
NP_824754    333 sdlqyneaIPYLMQELLPNGVLGIAVTGLLAAFMAGMAANVSSFNTVFTTDIWQRYVVKDREDAYYVRFGRLITAVGVMA 412 Streptomyces av...
NP_939374    314 pagkpndaILYLMRDLLPNGLLGVAIAGLLASFMAGMAANISAFNTVISYDIWQTYVIKDREDDYYLKFGRLATVAATLI 393 Corynebacterium...
EED06923     311 -nmsynmaLPLLIAKYYPPGMLGLGLTAMLASFMSGMAGNVTAFTTVWTYDIYQAYIKKDAPDKHYVNMGRWAVVVGVII 389 Alicyclobacillu...
EFL24212     312 -gptyndvIPEMMQRFLPTGVLGIALTGLLAAFMAGMAANISGFNTVFTYDIWKPYVVRDRDDRYYLTAGRYATVAGIAV 390 Streptomyces hy...
EEZ78337     316 -klshneaLPALIGKVMPTGLVGLALAALIAAFMAGMAANVSSFNTVVTYDLWQTYIRPGRKDTYYLRVGRKLTVAGVFI 394 Actinomyces sp....
ADF52824     305 ---dgdqaLPMMIKSILPPGLIGLMFAAFFAGLMSSVDSLLNSTATLFTKDIYEPFIKKGADDKHYLKVGQITTLVLLFV 381 Zunongwangia pr...
YP_887992    343 gevtyndaMLVMIRDILPNGLIGVAITGLLASFMAGMAANISAFNTVFSYDIWQQYVVKDRPDNYYIGVGRIATVAATIL 422 Mycobacterium s...
Feature 1                                                                                        
YP_644805    401 SVGTAYIVLGFasIMDYVQLLHGLFLAPLFGTFLLGMFWKRttpwGGFAGLVSGTAAGLVLyglellg----------ti 470 Rubrobacter xyl...
YP_001837663 384 AIFTSYIAMQFenIMNYIQLLFSFFNAPLISIFLLGMFWKKaskwSAFYGMLVGTASGLIHyflyang----------yl 453 Leptospira bifl...
YP_822512    417 SIGTAYMVMSFasIMDYVQALFSFFIAPLFGTVILGMLWKRaspaGGFWGLAAGTASSIGMwawvkidhtai--qyvams 494 Solibacter usit...
NP_824754    413 SIGTAFIASSFsnIMSYLQTLFSFFNVPMFVVFIIGMFWKRasmkSGVWGLLAGTTAAMVNyfwiykqg---------vi 483 Streptomyces av...
NP_939374    394 AVFTALLAQNFgnIMDYLQTLFGFFNAPLFATFILGMFWKRmtphAGWTGLVAGTASAIFYwylatftes------satl 467 Corynebacterium...
EED06923     390 SIGTAYFAAGFpsVMDYMQTLFSFFNAPLFGTFLLGMFWKKttpwGGFWGLLAGIVGAFAMyfflpa------------h 457 Alicyclobacillu...
EFL24212     391 SVAAAFVASEYnnIQNYIQLLFSFFNSPLFATFLLAMFWKRvtpwAGFWGMLSGTAAAAVAhlsayhigwfypggevgph 470 Streptomyces hy...
EEZ78337     395 AIGAAFIAAEFnnIQDYIQLLQSIFSAPLFATFVLGMFWKRmsgpAGLWGLVAGAAGAAAVqigyqng----------fl 464 Actinomyces sp....
ADF52824     382 GVATSPISSDFpgIYVAIQTFMSYFQGPLFAILLLGIFWNRttqwGGLSSLLIGIGFAVYLnvfke-------------- 447 Zunongwangia pr...
YP_887992    423 AIFTALIAAGYsnLMDYLQTLFGFFNAPLFATFILGMFWRRmtstAGWTGLVAGTLSAVTVfllgesg-----------v 491 Mycobacterium s...
Feature 1                                                  
YP_644805    471 qygapMAGNFWRAWWAWLVCFVVTIAVSLvtRPKEERELRGL 512 Rubrobacter xylanophilus DSM 9941
YP_001837663 454 yyksdMVSNFYGAIYSGVFCFLVMVVVSLweSEDPNRDLHGL 495 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Par...
YP_822512    495 pnakdMAENMFRALWSWLVCVIVTVVVSLmtKPKPEKELVNL 536 Solibacter usitatus Ellin6076
NP_824754    484 dipsdQGANFVSAIVGFVAGAVVMVAVTLftAPKPEAELAGL 525 Streptomyces avermitilis MA-4680
NP_939374    468 lnlpgQGTAFVAAGIAFSVDILVSVIVTMftQPKPDHELVGF 509 Corynebacterium diphtheriae NCTC 13129
EED06923     458 mfsspDAGNFWRAWWAWVITVVVTVLVSLvtQGKRPEELEGL 499 Alicyclobacillus acidocaldarius LAA1
EFL24212     471 dtinaQMANFYGALFAFVVDAVVTIAVTFitKPKPESELRGL 512 Streptomyces hygroscopicus ATCC 53653
EEZ78337     465 efnsqQAASFTGSGMAFVFDVVVSVLVTLrtSPKPVEELDGL 506 Actinomyces sp. oral taxon 848 str. F0332
ADF52824     448 nyftiEDPFLYISWWSFLLASIINVIVSLttKKHSEKELRGL 489 Zunongwangia profunda SM-A87
YP_887992    492 inlpgQGVPFVAAAAAFVVDIAVSVVVSLvtTPKPAHELAGL 533 Mycobacterium smegmatis str. MC2 155

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