5BRA


Conserved Protein Domain Family
PBP1_LsrB_Quorum_Sensing-like

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cd20001: PBP1_LsrB_Quorum_Sensing-like 
ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein
Ligand-binding protein LsrB-like of a transport system, similar to periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.
Statistics
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PSSM-Id: 380656
Aligned: 24 rows
Threshold Bit Score: 397.803
Created: 15-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on Salmonella typhimurium LsrB which binds R-ThmF (autoinducer-2)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #     ##                                                                  
5BRA_A     46 TIATVVKvdgiaWFDRXRDGVDQFKAd--tGNDVWXVGpsq-adaAAQVQIVENLIAqGVDAIAIVPFSVEAVEPVLKKA 122 Ochrobactrum anthr...
SCI00004   31 TIALCAKtegiaWFDDMRTGVDEFNAdh-eDVYSYEINpeg-sdaAKQNAMLEDLIAqGVDAICCVPVDAQAVAETLQKA 108 uncultured Clostri...
BAR00840   12 KMVLVAKqegipWFDDMRTGVEQFGKdnagKVDVKQIApds-gdsAKQVQMVSDLISqDVDAIVVVPNDPQALKPVIKQA 90  Bifidobacterium br...
ADK83283   37 TVVMIVKqs-dpWFDDMALGIEQLKKd--tGMNVYVQVpas-gdpSLQISIMENLIAqNVDAICIVPNDPKSLIPTIKKA 112 Sediminispirochaet...
EPF30964   33 EVAVVVKle-hpWFDDMKIGINEAAKe--fGVNATMLApae-adaAQQVALIESCIAkGVDAIAVIPNDPAALEPVLKKA 108 Treponema maltophi...
SCH23412   54 KIAVVPKmtnlaWFERMEQGVDDYNEa--nGTSVEYCGsp---egDGQAAFVEGLISqGYDAICVVPFDVEALDPVLAKA 128 uncultured Ruminoc...
EET62736   31 TIANTPKcigisWWDRMQVGNERFTEa--tGNEVYQSGptgdadvAVQISSIEDAIAsGVDAITVIPSDPSAVETTLAKA 108 Marvinbryantia for...
SDX05740   37 RFVNVIKvtanaWFQNMDSGVKAFAKa--tGVKATQTGpaq-ataEGQVSIIQNLIPqKPTAIGVDPNSQPALEGVLAKA 113 Rhodobacter sp. 20V17
SCZ46569   34 EIVMCAKqegisWFDDMRTGVEDFAKd--fGVNAYQIApet-gdpAKQAQMVESLIAkNVDAILVVPNDPKSMEPVLQKA 110 Afifella marina DS...
GAP22128   41 EIVMVAKmegvsWFDDMRVGVEQFGKd--yNVNAYQIApdt-gdpAKQAQMVEDLIAkGVDAILVVPNDPKSMEPVLKKA 117 Leptolinea tardivi...
Feature 1               #             #                                  ##  #                
5BRA_A    123 RErGIVVISHEasniq-nvdyDIEAFDNKAYGANLXKELGksxgGKGKYVTTVGsltskSQXEWIDGAVEYqkanf-pex 200 Ochrobactrum anthr...
SCI00004  109 RDkGIVVVTHEasdildyvdyDLEAFDNDYFGTLYGQYLAeamgGEGQYYAAVGglgmtTHMQWFNSMVDYlkenypdme 188 uncultured Clostri...
BAR00840   91 KAkGIVVIAHEasniaddvdyDIEAFQNTDFGEAFCKPLAegmgGKGKLAAVVGsktmeTHMAWYNSCKSMlekdy-pdi 169 Bifidobacterium br...
ADK83283  113 RDaGIIVVTHEapdiaeyvdlDIEAFKGEEFGALFGEALGkalgGKGQYAGFVGgltmtTHMEWYAAATQKiasdy-pgm 191 Sediminispirochaet...
EPF30964  109 QSaGIITLAHEaptaq-nvsfDIEAFDNAVMGRRFIDNIVkyygDSGNYVFFVGnltaeTHMVRFKAATEYqkaky-pkl 186 Treponema maltophi...
SCH23412  129 KEaGIVVICHEastve-nmdyDVEAFDTLEYGAHLMEKINelsgGKGRVIQTVGaltsqSHVEEAQGGKDWaekn--apd 205 uncultured Ruminoc...
EET62736  109 LDnDIVVISHEaegle-ntdyDLEAFVNEEYGAHMMDLLAeqmgSEGGYVIMMGtltasSHQQWTEGAIKRqeemy-pdm 186 Marvinbryantia for...
SDX05740  114 QKaGIFVFSQEapqlk-htnlDLEAFSNAEYGKQMMDALAscmgGKGEYVSFVGhltaaSHMAWAQAELNEakakf-pgi 191 Rhodobacter sp. 20V17
SCZ46569  111 KDaGIVIVSHEakslagtadyDVEAFKNEDFGALMFDKLAkamnGEGKFVAIVGaltmeTHMQWFNAGMEHikadypeme 190 Afifella marina DS...
GAP22128  118 KEkGIVVVTHEaqalapivdyDLEAFKNEDFGVVMGKALAeamgGEGKYTGFVGaltmeTHMQWFNAMQEYlkke--ypk 195 Leptolinea tardivi...
Feature 1                                            #  ##                       #            
5BRA_A    201 sEATGRLETYDDa--NTDYNKLKEAXTAYP--DITGILGA--PXPTSAGAGRLIAEGglkgkVFFAGTGLVsvaGEYIKN 274 Ochrobactrum anthr...
SCI00004  189 lVNPDGIPGEDDnneQTAYDLAVQAIAAYP--DLKGLVDCaaSSNGMALALEEQGRTd----IKLVGLATPsqgGAYIKD 262 uncultured Clostri...
BAR00840  170 eFVSDEPYEDNNd-dDTARKVATEILNAHP--DITGFFGT--SVSAGSNMAAVLKERnn-knIYVSSLGIPsvdMPYIDE 243 Bifidobacterium br...
ADK83283  192 qNISKEPYEDSNs-iDTAYSKTVEILKAYP--NIKGFFDC--SAHGVGISQALKDKGrt--dLKVVSLAVPsmsSNYIKD 264 Sediminispirochaet...
EPF30964  187 nLLTPVPIVDEEn-tQIAYEKSLELLATYGn-KINAIVSC--ASASPVGVAKALKEKgyagkILNIGSSVPsmvKPYVED 262 Treponema maltophi...
SCH23412  206 lKVDDQPIVSDDn-qDTAYSKVKEALTADTkhEIVGIQCA--AMSETPGAAQAVEELglqgkVHIAGTSLMsvcGEYVED 282 uncultured Ruminoc...
EET62736  187 yQVCDPVEGSSQ---EASYNAAKEVIAAYP--EIGGFIGC--DTNNPPGIAMAVEEAgksgeIAVTGTCLVsqaKDYLNS 259 Marvinbryantia for...
SDX05740  192 kRVTGPVVANENs--EIAYQKTKELLVKYP--HLKGFLGS--ASTDIPGIARAVTELglsgkVCIAGTSVPsltRNYVNA 265 Rhodobacter sp. 20V17
SCZ46569  191 fVLSEPIEDNNDe--KTALDKVNEVLKRYP--DLKGIVGC--SVSGTSMAALAVEKLrr-kdIAVVGLGLPsinGPYLED 263 Afifella marina DS...
GAP22128  196 mEFVSKQPYEDNndeKAAYAKVQEILKTYP--DLKGMFGN--SASSTTMEGLVMKEKnn-knIKVVGLSLPsmaGEYIKD 270 Leptolinea tardivi...
Feature 1            ##                                                                 
5BRA_A    275 DDVQYIQFWDPAVAGYAXNXLAVAalekkndqikaGLnlglpgyESLlapd--aakPNLLYGAgWVGVTKENXD 346 Ochrobactrum anthropi AT...
SCI00004  263 GTQYRGLCWRPADAGYTACEIAYNilkge--eitsESsftkegyETVtv------dGNLVIGNaPLVFDADNVD 328 uncultured Clostridium sp.
BAR00840  244 GWVQYAQTWRPADAGYAALQLAYDkvkge--sietGLdlkadgyGSVev------kGHQVYGDaPLVLKKGDYA 309 Bifidobacterium breve DS...
ADK83283  265 GSMSTGFAWRPADAGYATAAAALMlinqe--tigtGTdlhatgyENVtr------eGNIAYGFaPLEFTPENVD 330 Sediminispirochaeta smar...
EPF30964  263 GTCTVISLWRPADAGYVLVWMAKEiaeg----rtiTNgqtipkfGKVtv------nKKLVVGGdAGCVDWSKET 326 Treponema maltophilum AT...
SCH23412  283 GTVELMSFWDPALAGQAMIELAVAtlngt--vgedTLslpvegyENLtl------eGKVYTGSaWIDVDKDNCN 348 uncultured Ruminococcus sp.
EET62736  260 GTIKTFTFWDPADAGEAMCALAVKvldge--tiedGInlgvdgyEACtv------kDNIIYGEaWVDVTTDNMG 325 Marvinbryantia formatexi...
SDX05740  266 GTIQDVFLWDSALTAHAVMNGALMmlqgk--kvgvGTdlgvpgyTHIkkcegtdvsAHCFQGNaILKLTKANIG 337 Rhodobacter sp. 20V17
SCZ46569  264 GYQNVALCWRPADAGYASAFVAYKllnge--tveaGMdlkrpgyDSVti------eDGVVYGDaTLILTAENWK 329 Afifella marina DSM 2698
GAP22128  271 GFIQQAQCWRPADAGYVSALIALNilkge--kitdGMdlkkpgyEKVil------dKKIIYGNaPLILTKDTVD 336 Leptolinea tardivitalis

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