Conserved Protein Domain Family
YycJ-like_MBL-fold

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cd07733: YycJ-like_MBL-fold 
uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain
Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.
Statistics
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PSSM-Id: 293819
Aligned: 17 rows
Threshold Bit Score: 195.56
Created: 9-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   # # ##                
BAA11296        6 SVLASGSTGNAFYLETedhAFLVDAGLSgKAMdg------lMAQIGRKLddVDGIFVTHEHSDHIKGLGVVArKYKLPIY 79  Bacillus subti...
NP_868648       4 LCLQSGSSGNCVFVDTgseCVLFDAGISfRKVqt------rLNEAGRDAseIDAIVISHDHRDHIGCLGVLNrKLNVPIH 77  Rhodopirellula...
NP_249703       4 AVLGSGSRGNSALVSSsdtRILIDCGFPlREIik------rLARLGLSPaqLDAILVTHEHADHIHGVELLArHYQIPVY 77  Pseudomonas ae...
NP_743399       4 AVLGSGSQGNGTLIASgdtFILVDCGFSlRETer------rLALLGVSAaqLSAVLVTHEHADHVHGVGLLSrRYNVPVY 77  Pseudomonas pu...
NP_603797       4 SILGSGSAGNSTFVEIedyKLLVDTGFScKKTee------kLEKIGKKLsdISAILITHEHSDHINGAGVIArKYDIPIY 77  Fusobacterium ...
NP_220257       5 FPIASGSKGNCAYLGTrscKLLIDLGISkQAVte------aLHSMGIHPedIQGIFVTHEHSDHIAGLRSFIkTYRTPII 78  Chlamydia trac...
NP_809735       6 ISLASGSSGNCYYLGTdtyGILIDAGIGiRTIkk------tLKDFNILMesIRAVFVTHDHADHIKAVGHLGeKMNIPVY 79  Bacteroides th...
jgi:Mboo_2153   4 TILASGSKGNCTYVAGsngSLLIDAGLSaKETfv------rMTKTGCDPdrVAAILVTHEHGDHIRGLDVLArKLSCPVY 77  Methanoregula ...
jgi:Mpal_2782   4 TALGSGSKGNCMLIEGesgSLLVDAGLAaREIqt------rLALVGADPgsIEAILVTHEHTDHIRGLDVMArRFDLPII 77  Methanosphaeru...
jgi:Mhun_2881   4 SVLASGSKGNCVYIEGtsgALIIDAGRSaREIlgtkdrkgrLFEAGGNRdlIEGILITHEHGDHVKGLGPLGnALKVSAY 83  Methanospirill...
Feature 1                                                      ##                     #           
BAA11296       80 ANeKTWKAMENQIGkid--tdqKFVFPMetvKSFGGLDVESFGVSHDAAEPMFYVFhys-grKLALMTDtgyvsdrmkgi 156 Bacillus subti...
NP_868648      78 ISrRTLRSTERRVPlgp--vhdIQHFVPgetFTIGETAIETMPTPHDGVDGAAFTLdng-csRFGLWTDlgcvfddmlas 154 Rhodopirellula...
NP_249703      78 LSaGTLSGMRRPVHp-------VELLRAgqrLAIRGLEVQVVGVSHDAREPTQFVLsdg-qrRFGMLTDlgvataevlec 149 Pseudomonas ae...
NP_743399      78 LSqGTLRGMRKPVEv-------AGFLACgqsLHIGSLEVTAARVEHDAYEPLQYVVsdg-krRFGMLTDlgsydalller 149 Pseudomonas pu...
NP_603797      78 ITpESYRAGAVKLGeid---ksLLNFIDgdfILNDKVKVSPFDVMHDAERTIGFKLetqlnrKIAISTDigyitnivrey 154 Fusobacterium ...
NP_220257      79 CNiETARSLRQLLDlc----ptFKIFTTghrFSLEDLRVQTFNVPHDAVDPVGFIFqys-gmKLGFCTDlgwvtswithl 153 Chlamydia trac...
NP_809735      80 TTaRIHEGINRSYCmteklstsVRYLEKqvpMMLEDFRIESFEVPHDGTDNVGYCIeid-gkVFSFLTDlgeitptaady 158 Bacteroides th...
jgi:Mboo_2153  78 GTqGTLAEFLSHRRtsdr-plqIQACQYdtaFSAGEFRVLPFATSHDAAEPCGFVLqen-gsKIGYCTDtgivtshmldl 155 Methanoregula ...
jgi:Mpal_2782  78 ATgGTLAEFFLHRKvskk-tvtTITCHPgttLEIGDFSIEPFSISHDAQDPCGYCIeek-ssRLGYCTDtgvlsgeviel 155 Methanosphaeru...
jgi:Mhun_2881  84 GTsGTLDVTNRMIQtkk--nftFQSVHPgdpFSIGDFTVTAFSVSHDATDPVGYLIeeg-glRICYCTDtgvvtsgmmem 160 Methanospirill...
Feature 1                                             #
BAA11296      157 irsanvfvfesnhdvgmlqmgrypwsIKRRILSDVGH 193 Bacillus subtilis subsp. subtilis str. 168
NP_868648     155 vntldalfiesnydenmlatsgypefLRDRISGSGGH 191 Rhodopirellula baltica SH 1
NP_249703     150 yravdalvveanhdstmlaggpypyfLKARVGGSRGH 186 Pseudomonas aeruginosa PAO1
NP_743399     150 yqgldallieanhcrdllarghypafLKQRVGGMQGH 186 Pseudomonas putida KT2440
NP_603797     155 fkdvdamviesnydfntlmncaypwnLKERVKSRNGH 191 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
NP_220257     154 lcdcdylliesnhdpemvlrssrpesCKQRILSKQGH 190 Chlamydia trachomatis D/UW-3/CX
NP_809735     159 iskanylileanydeemlkmgpypqyLKERIMSRTGH 195 Bacteroides thetaiotaomicron VPI-5482
jgi:Mboo_2153 156 lrhcdgvvlesnhcpemlangpypesLKRRIRSNRGH 192 Methanoregula boonei 6A8
jgi:Mpal_2782 156 frrcdglvlesnhcpqmledgpypamLKRRIRSRRGH 192 Methanosphaerula palustris E1-9c
jgi:Mhun_2881 161 ikksdgvilesnhcpqmlkdgpypafLKRRIASSRGH 197 Methanospirillum hungatei JF-1

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