1JJ2,2AAR,2D3O,1VP0,1VS6,2AWB,2J37,1S1I,1R73,2B9P,2GO5


Conserved Protein Domain Family
Ribosomal_L29_HIP

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cd00427: Ribosomal_L29_HIP 
Click on image for an interactive view with Cn3D
Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulation of blood coagulation. It has also been shown to inhibit apoptosis in cancer cells.
Statistics
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PSSM-Id: 238243
Aligned: 173 rows
Threshold Bit Score: 45.5563
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Structure: 1JJ2_U: Haloarcula marismortui 50S ribosomal protein L29 binds 23S rRNA, defined using 3.5 A contacts
  • Structure:2AWB_X: Escherichia coli 50S ribosomal protein L29 forms an interface with 23S rRNA, defined using 3.5 A contacts
  • Comment:L29 binds a kink-turn site of the 23S rRNA in Haloarcula marismortui

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #  #                                  #         ## ##   # 
1JJ2_U      6 QEIRDMTpAEREAELDDLKTELLNARAVQAAggapENPGRIKELRKAIARIKTIQGEE 63  Haloarcula marismortui
P56052      4 TELKDKSiKELEELLHAKKAELFELRVKLKAmq-lSNPNEIKKARRNIARINTAINAH 60  Helicobacter pylori
P10142      7 LDLRNLSvDELIKTNESKRAELFALKFQAAVgs-lEQTHRIKEIKKEIARIELALSEK 63  Mycoplasma capricolum subsp. capricolum ...
P47405      5 KELKQKSnEELVKLVIKLKGELLEYRFKLAHge-lDKPHLIAKVRKLLAVVLTILTER 61  Mycoplasma genitalium
AAZ44273    4 KELLKKTaSELNSLLLEYRSELFTLRFKNQSsn-lDQSHKIGEMRKMIARVLTIISQR 60  Mycoplasma hyopneumoniae J
YP_015940   4 KDIKNKStTELNDLIVELKAELFLLRFKNKTsq-qEQTHKIQVVRKDVAKVLTALKEK 60  Mycoplasma mobile 163K
NP_758392   5 KELRTKTdNELGNLISKLKIQLLEMRFKIANge-vEGLHKFKEIKKTIAMAMTVLSER 61  Mycoplasma penetrans HF-2
Q98PZ0      4 KDINVKPvAELEQMVNDLKAELFTLRFQNSTgq-lDQTHKIKMVRQDIAKVLTALSQK 60  Mycoplasma pulmonis
O31163      2 NDLTKKSvEELKKLEEESRAELFALRFQSAMgn-lEKPHRIGELKNQIARILTILSAR 58  Spiroplasma citri
Q9PQQ2      6 QDLRKKDsLELEKIVIELKAKLLELRFAAANge-aEKLHTAKEIRKTIARALTILNER 62  Ureaplasma parvum

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