Conserved Protein Domain Family
Frigida

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pfam07899: Frigida 
Frigida-like protein
This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time.
Statistics
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PSSM-Id: 462311
Aligned: 49 rows
Threshold Bit Score: 220.187
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002961449  156 EVRVRPELKTLCENMDGEGLRRYVSEHRKDVSALR--L--ELPVAIRCAIDPARLVLDALEGYSIPsdsesgGGGDRKES 231 
O04650        836 ETIASSHLGNVDVLLDPEGSTSF--------------SpnEVFTGLQGMIDPASYVLNVVNDELLG------AQQRGELG 895  thale cress
Q10HH4        295 LPSCSDHLRGVCAGMDVRGLLKLVCKN----QSIClwH--EYPVVMRHAPDAAALVLQVVQGFLLS-----------KKM 357  Japanese rice
Q5W6K5        255 eASLRRSLAAACASMDSSSLARILCSSGSSSSSHAtlAarHFRPALLAAAEPAALVVRAVRDLLAGtapirdSA------ 328  Japanese rice
XP_004252292   46 SKSPDSQLETLCKTMCGKGLRSYILSKLPEKNTLR--E--ELTKALKLAPNAAKLVLSCMGDFFAKr-----GKAFDKDA 116 
XP_015169712  202 SPRSSSEVKILCETMNSHGLRKYMIRRLSCLKTLQ--Q--KVPKALKLSPNPARLILEAIGMFYTQg-----SNTYVEGS 272 
KRH63904      104 EEEEEDELLTLCKTMNSRGLRKYVLTRLSETASLR--E--QVPLALRSAPNPSRLVFECIGRFFLQg-----SKAYTKDS 174 
XP_025879883  118 GDPSAEHMGRICERMGSGELLRFVISRMGDLSWLL--R--AVPPALRRAPNPAELVLRAIGRYYIRpggrhtEA------ 187 
XP_004986116  165 GDPSAAELELRCKQMNFRELRRFVTAHVRDREWLR--K--VGPAALRRAEDPASLVLRAVGRYYISaesgdaEA------ 234 
Q5XV31        534 PSGTETKLNILSGSIKADMLRELV-----EKQPLKesE--DLSNALKCTPDPAKLFLDTSMALCPT------NTEGGYEF 600  thale cress
XP_002961449  232 GVSANRRACVLILESAGSALAdpvlgvehpVVPFNIKERAKELAGRWKSRMDVLkdssgavaSENSLDAQVFLQLLATYG 311 
O04650        896 LAEPVIKTLIPLLEELPRVVK----------SSKHLLSDALQVATRWSwmmg-------nstQMSPLEAWGFLQLIVAYG 958  thale cress
Q10HH4        358 KTTKVWGNCVGLIRCLPAVNA---------SLSSDTMKQAKQLAKDWKEMIDSTgs----srDVLNLSSWGLLYFLISYN 424  Japanese rice
Q5W6K5        329 -----WESCVELLSCVPKLAV---------APSPGTMEQANRLAEDWKEMIGRTesc---smNLGRLAVWGLLNFLVSYN 391  Japanese rice
XP_004252292  117 RMIATREASALVLECFLLIGFd--------VIDEGVKEEAAQAAVIWRRRFVDErg----irKASTMDARGLLLLIGCFG 184 
XP_015169712  273 PLITERRALVLLLECFLRMIGegegegssvEIENGEKEEAGQAALAWYRRLNFEgg----ilKAQEIDARGLLLFIGCFG 348 
KRH63904      175 PMIPARQVSVLVLEYYLLSGCvgn----evDLEASLKREVDSAAVAWRKRIFVEgg----llKAAEVDARGLILFIAIFG 246 
XP_025879883  188 -------ACELLLLSYVRAGCplrpg--qeagDDHLRAEAREAALSWRSRLVRSkgr---vaAAAANDARGLLLLMAAFG 255 
XP_004986116  235 -------ACMLLLELYVRAGCprpp-gqghGEAAELRQEAREAALTWRSRLLRVsgr---vgDAGARGARGLAFFMAAFG 303 
Q5XV31        601 KMLITSASCSLLLNQLKKLLP---------KIGHPVKGDAKKLAVYWKDKIAKS--------KRDQLEVICFLQFLGIFG 663  thale cress
XP_002961449  312 IASEYDDEELCRLVTTVA---RRRQSPALCRALGLAPKIPDVVDKLAKEGKQVEALAFAHAFEIMDRVEPVP-LLKAYLK 387 
O04650        959 LVHATSQDNTLRFASYVA---HFKQAPKLFESLGLSYAMPNLVKKLLDERHYFMAIRFIFYFKLKFNFSPLE-LLKDEII 1034 thale cress
Q10HH4        425 IVSEFSVDEIFCIFGTLSrkqQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLS-LLKGYVE 503  Japanese rice
Q5W6K5        392 IVLEFDAEEIIHFFGTLPd-dKKQCCISLCKYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLS-IMEDYIQ 469  Japanese rice
XP_004252292  185 IPQIFYNEDIRDLIRVSN---IREISTALRRSNVLMEKIPDIIAGMVKNKMEVDAVDVAYTFGVEEKCSPCE-ILSSFLE 260 
XP_015169712  349 IPQAFRNEDIKDLLHQSY---IKMISSSVRRSSVLMAKIPEIIEGMLNQNMVVDAVYFTFCFGLEDRFNPQR-LLTSFLH 424 
KRH63904      247 IPTVFKDEDIYSLVSASN---GREFSDALLKSQPLLKRVSDVADGMIKKGMAVKAVDLAYTFGFEEKYSPRT-ALTSFLQ 322 
XP_025879883  256 VPVEFPSQEIFELLHAAG---GLACAEVLKCSKHFLDKLRDVVAHMLNRGIYHQTVATIIAFELQDAF-PLSaIATCVIE 331 
XP_004986116  304 VPVEFPAQELYELLVAAD---ISACTKVLKFSKHFVKKMRDVVVEMINKDMHLQAIRIILAFELQNAF-PVEsTLTHIME 379 
Q5XV31        664 IVSEFKADDLLGLLDNSY---WQTVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSaIINDSLR 740  thale cress
XP_002961449  388 DAR-------KSAQVILKNGNNSaAAQNDSSMKELSALKSVIKCIEEYKLDAQ--FPPQSLQKRIDVLERAKADRKRAAV 458 
O04650       1035 TLR-------VSTKEKR-------RLDSQAEDRDAAKLKDIIELIEDFKLDID--LPVELIVKFMVPRENQNENQYVVSS 1098 thale cress
Q10HH4        504 RAK-------QNALDIINMNSPR-KSLSPLITKEVDSLMVAQNIVQQQITDFN---VRSGMLAEMKKLLDQYATKRSSGD 572  Japanese rice
Q5W6K5        470 NAK-------ETAQEILSMESDS-ESLKLSMSKQVNALILSWRVVGECNIDSV---HCDRIKAEITQLLHKYANKRHSLE 538  Japanese rice
XP_004252292  261 ELR-------ESLKKKKCQSHGShaVVNEANKRELSTMKSVIECLEAHNIDPSklIPRFRISDRIMSLEEKIARNDQrre 333 
XP_015169712  425 ESEvslcnkiQTFEQNKGSKDSAlQEIIGAKRRYLGTLKSVIQCLGRNNIDHSkfLSEWQIGEKVIGLEKEITQFRKNLK 504 
KRH63904      323 KSE-------ETWKKAKQDARDFpSALKVAHEKYLAALKSVVNCLEGHKIDFVklLPGWQLKNKITNLEKDIGDANKKIE 395 
XP_025879883  332 RVG-------RTKDQDSQEQHHL-PGSKENDEEKLALLRLLSKYVEDPKQCST---ENFSIADRIAMLEQSLAKPHQAFT 400 
XP_004986116  380 KLD-------HDRKDESEGQA------LARDEEELTLLRSISKCMENHKLCPS---EFPNFAERIALLEERVGKPKQAFA 443 
Q5XV31        741 ITK-------ESAEKSYREAKNEsTTQVAAIDRQVRALRAAIKCISCHKLESE--FQLGDLEEQIKSLLKLRRNTSNGsg 811  thale cress
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