3DTO,3GW7,3B57,2QGS,2PJQ


Conserved Protein Domain Family
RnaY

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COG1418: RnaY 
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]
Statistics
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PSSM-Id: 441028
Aligned: 705 rows
Threshold Bit Score: 79.557
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DTO_A         7 L--Q------SAEAWV---KkQLXDEYSGHDWYHIRRVTLXAKAIGEQE------K--V----DVFVVQIAALFHDLIDD 63 
WP_103082870  29 InhE------MIVSm----K-NFTQHGNVSCLEHCINVSYSSYIICKRl------G--L----DYRSAARGGLLHDFFLY 85 
WP_128425694  29 IdhE------KVKLm----K-KYMQHGDISCYDHSLRVSYISFRLCKKl------G--L----DPCSAARGGLLHDFFLY 85 
WP_089608952  18 LtnE------TFSQl----I-NY-NHHHTSIMEHALTVSYLSYLICKKl------N--L----DYVSGARGGLLHDFFLY 73 
YP_003317893 200 V--P------DREECLellR---IMGTPTGVVEHSLKVAEVGLRIGRVlad-agyE--L----DVEAIRSGCLLHDLAKG 261
WP_013580105  16 VtlPqskliqQITEFV-------RDTESDLLFNHSSRVYYFGALAGRRR------GltF----DPELLYAGAMFHDIGLI 78 
WP_083764174  18 I--P------SRVECLalmS---RMEMPVHIRKHSMMVAITAVFLGRMlng-ngvR--L----DLRLLEAGALLHDIAKA 79 
WP_013673654   8 IeiPdtelvrQATELV-------RAAADDTLFHHSRRVFLWGSLKAAAR------GleV----DPQLAYVGALFHDLGLT 70 
WP_012578157  22 IehR------HMQIe----R-CYYQHGNVTTFEHSVRVACLAVWMADRa------H--LwyrvDLKSLIRAALLHDYFLY 82 
WP_015752243 203 ptpqeaevllDw-------E----TKGDADISAHSRQVASVTKRLALQinsrnpgS--V----DVDLAVAGALLHDIAKG 265
3DTO_A        64 KLv--------------dDPETAKQQLIDWXEAAGVPSQKIDHTXDIINTIS-FKGGH-GQ----SlaTREAXVVQDADR 123
WP_103082870  86 -Dwhtdkpy--kglhglvHPRIALDNAIKYFD-LN------EKEKDIIQKHM-WPLTMrPP----R--YKESFIVLCVDK 148
WP_128425694  86 -Dwhtdskpy-tglhgfvHPSIALKNANEYFS-LN------NIEKDIIEKHM-WPLTLrLP----K--YKESYVVLMVDK 149
WP_089608952  74 -DwreykkqphkknhglnHPKVALANSHQCFE-LN------KVECDIILKHM-WPKAIgFP----R--YWESAIVSFVDK 138
YP_003317893 262 gr---------------dHEAEGGRILSEMG--------FT-RLGEMVASHRd------LPe--gA--SMEAQVLYLADK 307
WP_013580105  79 PAyssa---------terFEVDGANAARSFLQEHGIDAAQIDHVWNAIALHTt-PGI---Pq--hM--HPVVALVTAGVE 141
WP_083764174  80 RGlqt----------genHSQLGAKMVGELG--------F-ELLAPIVEDHAt-LDEakl---rgP--VDESLLVNYADK 134
WP_013673654  71 DThrtr---------drrFEIDGAEVAEAFLLDHGTSPADARAVWLGIALHTt-PEV---Pl--hL--APEVAVVTLGVE 133
WP_012578157  83 -Dwhdwdnge-hqwhgftHGHAALVNALKDFK-LN------DIERNSIENHM-FPMTLvPP----R--YIEGYLVTLADK 146
WP_015752243 266 QPr---------------HADTGAKHLKACG--------FAPALTAIVAQHAdY-----EPeeksP--VTETEIVYTADK 315
3DTO_A       124 LDALGA-----IGIARTFAYSGnkgqpiydpelpiretxtveeyrhgkstaINHFYEKLFKL-KDLXNTE-------TGK 190
WP_103082870 149 YCAf-----------------------------------------------------------METVTYKgr----vYTN 165
WP_128425694 150 YCAt-----------------------------------------------------------FETWDSIskkllwkNTN 170
WP_089608952 139 YCAc-----------------------------------------------------------NEFWIKF-------TSF 152
YP_003317893 308 SVM-STrlvaleerme---------------------------------------------------amearfagdpPAL 335
WP_013580105 142 MDVLGIdynlfADPAREAVVSRfp--------------------------rTPHFKEHILQAfYDGIHHKpdttfgnVKA 195
WP_083764174 135 RVK-HDrivtisdrf--------------------------------------------edlvrryaKTE-------SHL 162
WP_013673654 134 TDVLGLdlheiTDEQRAQVVAAhp---------------------------rPDFKNRILRAfHNGMANRpdttfgtMND 186
WP_012578157 147 CSAt-----------------------------------------------------------AETFSLD---------- 157
WP_015752243 316 LVQ-GSrlvglddrfr---------------------------------------------------akyeafagntHAR 343
3DTO_A       191 QLAKERH-VFXEQ-FI---ERFLSEW 211
WP_103082870 166 KLFAALGkK------------INV-- 177
WP_128425694 171 QLKQLFDnVG---------KTFRVSL 187
WP_089608952 153 AFSYRKTkl---------gSTLKKIS 169
YP_003317893 336 EAARRRIrRAMGV------RALVEEA 355
WP_013580105 196 DVLADKNpAFQRGnFC---SVIRNSP 218
WP_083764174 163 RFMREKLi-----lYQeleLRIFEHL 183
WP_013673654 187 DVLAHFDpSFHRTdFV---EIIRGSA 209
WP_012578157 158 RFNKRALpAa---kPY---AEIEARR 177
WP_015752243 344 QAVLRRWkQa---------SQIVQRV 360
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