Conserved Protein Domain Family
RVT_3

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pfam13456: RVT_3 
Reverse transcriptase-like
This domain is found in plants and appears to be part of a retrotransposon.
Statistics
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PSSM-Id: 433223
Aligned: 24 rows
Threshold Bit Score: 113.515
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEC47084         303 RVKG--VsCLQSYGtGIGIVLVNANDDRDVCTARKvLQGNRSVFEAGYSALIVGIRFALNRGVRNLTVQIDHDVIVSQLT 380
Q9LSE9           197 NYDGafN-HQTRNA-KAGWLMRDENGVYMGSGQAI-GSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMN 273 thale cress
Q9ZPU0            24 NYDAgfN-VQNLDS-TARWIIRNHDGIAQHWGSLQ-LDNTSTPLEAETKALLAALQQTWIRGYLRVIMEGDCETLTNLVS 100 thale cress
Q9LW65            41 NYDVsnH-AGRQDS-GLRWIIRNSQGTCLDCGCGK-FQGRQTIKEAECTALIWAIQCAWDLGYRRVEFEGDNITVNRLIR 117 thale cress
EEF35036         285 NTDG--S-VDRQHA-GFGGLLRDNEGNAICAFVSK--APLDDIFLVELWAIWRGLVLALGLGIKVIWVESDSMSAVKTIN 358
wustl:cce_3955    20 LFDGefQ-CDLLQG-VAAAILLMPNGRRYTVSQLVsVNHK---DEAEYTALIIGLKKAQKLGLNTLAIKGDSDLIFNQVN 94 
P73154            18 FYAGea-lGQKGQG-AAVAILLLPTGKRTSVKQ---LLASATGTEASYRALLIGLQKARQLGIHNIEVKGHNEKVFDQVN 92  Synechocyst...
jgi:PCC7424_5115  18 LFNGttV-SKTTAG-AAAAVLLMPNGRRYTVSQ---FLSKASKGEAEYQGLIIGLQKAQKLGIRQLDVKGDSKVLFHQIQ 92 
WP_013322729      18 LFDGttV-SKATAG-AAAAVLLMPNGRRYTVSQ---FLSKATQEEADYQGLIIGLQKAQKLGIRKLEIKGDSQAIFYQIK 92  Gloeothece ...
XP_002525294      69 DTDAavH-FDKNIS-GLGMVLRDHKGCVKLVGSYP-MKQGLPVEVVEAMAIKCGLSVASSHGLWPSVVESDSLQVVNAIC 145
EEC47084         381 GKFqvNRENLKPMYWNIMHHKEeSFDTFTVEHISLEMNTEATDLAARG 428
Q9LSE9           274 NEK--LNFGRFNWIREGRFWQK-RFEEAVFKWVPRTNNQPADILAKHH 318 thale cress
Q9ZPU0           101 GSS--SHNHLANLLDDIRIWAK-KFSNVQFSFVRRGGNKVAHELAKLG 145 thale cress
Q9LW65           118 NKE--TNPRLRYYLEFIQQWSK-AFTTVKFTFRHREQNVCVDVLAKKA 162 thale cress
EEF35036         359 RVQs-HSGKANRCLNHIWALLK-KFEEYKVSHAWRETNKAADYLSKMV 404
wustl:cce_3955    95 GLTpvTQERLIKLYRIAIKLIR-SFEKISLEWISPEQNRPARSAAKRC 141
P73154            93 GLEeiDQPPLRHLHREVMTVMK-QFERVMVEWIPLDQNRPAYQTVQKC 139 Synechocystis sp. PCC 6803
jgi:PCC7424_5115  93 GLTtiKEDQLLRLYNQALKLIH-RFEKVSFELISPEQNRSAITAVNRC 139
WP_013322729      93 GLAkaQEPPIQRLHEQVIKLIN-RFEKISFELIAPEQNRSAITAVNRC 139 Gloeothece verrucosa
XP_002525294     146 NREv-IFSELAAVLSEIFAMLSlNF-SCDFKFIFRECNQMANALSKSA 191
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