2XQ2


Conserved Protein Domain Family
SLC5sbd_vSGLT

?
cd10325: SLC5sbd_vSGLT 
Click on image for an interactive view with Cn3D
Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain
vSGLT transports D-galactose, D-glucose, and alpha-D-fucose, with a sugar specificity in the order of D-galactose >D-fucose >D-glucose. It transports one Na+ ion for each sugar molecule, and appears to function as a monomer. vSGLT has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). This subfamily belongs to the solute carrier 5 (SLC5) transporter family.
Statistics
?
PSSM-Id: 271360
Aligned: 14 rows
Threshold Bit Score: 628.951
Created: 4-Dec-2008
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Na binding sitesubstrate
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #  #                           
2XQ2_A        14 MVFAIYVAIIIGVGLWV-SRDKKGTQKSTEDYFLAGKsLPWWAVGASLIAANISAEQFIGMSGSGYSI-GLAIASYEWMS 91  Vibrio parahaem...
EDY84464       7 VLFIVSVVGVIALGIWKsRDEDTTGEKGATDYFLAGRgLTWWLVGFSLIAANISTEQFVGMSGSSANWlGMAIASYEWMA 86  Verrucomicrobia...
NP_637142      9 VIVLVYLAGIFVLAQWV-SREKAGHSKSAEDYFLASKsLPWWAIGASLIAANISAEQIIGMAGSGYAI-GLAIASYEWMA 86  Xanthomonas cam...
YP_757955      9 IIVAAYAVSLIGIAFLV-SREKAGHKKDSTDYFLAGKaLPWWAVGASLIAANISAEQIIGMSGQGYVV-GLAIAAYEWQA 86  Maricaulis mari...
EDX81380      11 AILAIYAVFIFGLAQWV-SRTKAGEQKTSTDYFMASKsLPWWAIGASLIAANISAEQIIGMSGSGYVI-GLGIASYEWMA 88  Brevundimonas s...
YP_001193464  11 AVFIIYFIVVSVYGYTV-YRKRKQDEQDAKAYFLAEGnLTWWAIGASLIASNISAEQFIGMSGEGFFL-GIAVAAYEWLA 88  Flavobacterium ...
AEL28759       9 AIFIGYCILIILMGYFV-SREKEGHVKNSNDYFLASKaLPWWAVGASLIASNISAEQFIGMSGSGFAL-GLAISTYEWMA 86  Cyclobacterium ...
EDN88534       7 IIFIAYCLLILCVGLFV-SRGRKGDERDAGDYFLAGRgLAWWAIGASIIASNISAEQFVGMSGSGYAI-GLAMATYEWIA 84  Parabacteroides...
ADQ18169      11 GIFLAYFIIVSIYGIWI-YKNKGTKSADSKDFFLAEGsLTWWAIGASIIASNISAEQFIGMSGQAFQL-GLAISAYELIG 88  Leadbetterella ...
EEF77675      10 VIFIVYVLLIVVIGLWC-SRTRKGGVKDSKEYFLAGNtLPWWAIGASVIASNISAEQFIGMSGSGFAI-GLGIASYEFVA 87  Bacteroides cop...
Feature 1                                                                                        
2XQ2_A        92 AITLIIVGKYFLPIFIEKGIYTIPEFVEKRFnkKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIp-----LMYSI 166 Vibrio parahaem...
EDY84464      87 ALTLIVVGFWFLPKFLKAGLYTIPEFLEYRFdgVARLAMAIPAIVTLVFVTTSSVIFSGAKFVSEYYNDvpvindLTTMC 166 Verrucomicrobia...
NP_637142     87 ALTLLIVGKFFLPIFLRNGIYTMPQFLEQRYgkWIRTLMAVFWLLLYVFVNLTSILWLGSIAVSQVTGMd-----QTLAL 161 Xanthomonas cam...
YP_757955     87 AIVLLIVAKYFLPVFLDRNVYTMPQFLDQRFggGVKSIMAVFWIALYTAVNLTSVLWLGGLALNAVTGMa-----VLPAM 161 Maricaulis mari...
EDX81380      89 ALTLLIVGKFFLPIFLRNDIVTMPQFLQQRYgpTIRNVMAVFWLLLYVFVNVTSILWLGAIAVHTVTGFn-----QDYAI 163 Brevundimonas s...
YP_001193464  89 AIALIIVAVWFIPVYLKNKIYTMPQFLKTRYneSTALIMAVFWLFLYVFVNLTSILYLGAVAINGLAGGe-----YLHII 163 Flavobacterium ...
AEL28759      87 AATLLIVAIFFLPVYLKEGISTMPQFLLKRYdsRVRTVMAVFWLLVYVFVNLTSVLYLGALSLETILGVp-----MVYGI 161 Cyclobacterium ...
EDN88534      85 ALGLILVAKFFIPIFLEKKIFTMPQFLEERFdkRVKTVMAVFWLAVFIFINLTSILYLGALTIEKVMGIp-----MLYGI 159 Parabacteroides...
ADQ18169      89 AISLVVIAVYFLPMYLKNNIYTMPQFLQVRYngSLATIMAVFWLFLYILVNLTSIIYLGGISLEKMTGF------SFMSC 162 Leadbetterella ...
EEF77675      88 AASLIVVAVFFLPIFLKTKIYTMPQFLEIRYgkPVKTLMAFFWLLVFIFVNLTSILYLGALAIHKVVDIp-----VGFSI 162 Bacteroides cop...
Feature 1                                                                                        
2XQ2_A       167 LGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIggtdg-----------wfagVSKMVDAAPGHFEMI 235 Vibrio parahaem...
EDY84464     167 WLIAGFAAAYVFVGGLKACAWTDLIWGVALILGGVIVMTFAFNLLaekpaeeliltkvqnsnatvADLEAAGAWERFMLL 246 Verrucomicrobia...
NP_637142    162 TLIGVFALVYQLYGGLKAVALTDIVQVTLLVLGGLLVTGLTLSRIgdgag-----------vlagFKQLWSAHPEHFHMI 230 Xanthomonas cam...
YP_757955    162 IALAAFAVVYSLYGGLKAVAMTDIVQVVVLIVGGLLITWISLGLVsdgag-----------awmgATLLINEIPAHFEMI 230 Maricaulis mari...
EDX81380     164 VAIGVFALAYQLWGGLKAVALTDIVQVALLVCGGLIIGFIALSTIggegg-----------aaagFHTLLTQFPEKFDMI 232 Brevundimonas s...
YP_001193464 164 MIGLAVFALFISLGGMKVVAYTDVIQVAVLIIGGLVTSYIALTTVgqyfgvg-------enaiagFKVLMKEAPEHFKMI 236 Flavobacterium ...
AEL28759     162 AGLAVFAMLYSIYGGLKAVAWTDVVQVFFLVLGGLATTYLALSIVgsgn------------vfqgFSTLLTEASSHFNMI 229 Cyclobacterium ...
EDN88534     160 IGLAAFAGIYSIYGGLKAVALTDVVQVVFLVGGGLVTTYIALDLLgeggg-----------vyqgMVNLYGEASDKFHLI 228 Parabacteroides...
ADQ18169     163 AIFLTIFAVIITLGGMKVIGYTDVIQVVCLVVGGLATTYLALDLLsekvgdg-------ngvfegLRLIKEKADSHLHMI 235 Leadbetterella ...
EEF77675     163 VCLAVFAGAYAIYGGLKAVALTDMVQVIFLIGGGLLTTYIALNHYsedag-----------aiagMQKLIAQVPEKFDMI 231 Bacteroides cop...
Feature 1                                                                                        
2XQ2_A       236 Ldqsnp---------------------qymnLPGi-aVLIGGLWVANLYYWGFNQYIIQRTLAAKsVSEAQKGIVFAAFL 293 Vibrio parahaem...
EDY84464     247 NdgvdgeavarngpngsggkvhmvrpkedsdIPWt--ALLIGLWIPNFFYWGLNQYIVQRTLGSKsLAEGQKGIVLAAFL 324 Verrucomicrobia...
NP_637142    231 Lskdnp---------------------fykdLPGl-sVLLGGLWVMNISYWGFNQYIIQRALAAKnIGEAQKGMVFAAFL 288 Xanthomonas cam...
YP_757955    231 Fnsdhp---------------------nysdLPGi-wTLLGGLWVLHFSYWGFNQYIIQRALGSKsLSEARKGLAFAAGL 288 Maricaulis mari...
EDX81380     233 Lskdnp---------------------hyqeLPGi-aVLLGGLWVMNISYWGFNQYIIQRALAAKsLPEAQKGIAFAAYL 290 Brevundimonas s...
YP_001193464 237 Ipkptasssq-------------leidkyltFPGl-lSYAAGIWIINLNYWGCNQYITQRALGAD-LQTARTGILFAGML 301 Flavobacterium ...
AEL28759     230 Iekgemmipdg----------aggerdaymdLPGl-sVLIGGMWVVNLSYWGFNQYITQRALAAKsLNEAQKGMVFAGFL 298 Cyclobacterium ...
EDN88534     229 Ldkshp---------------------gykdLPGi-sVILGGLWVANLYYWGCNQYIIQRALAAKsVREAQNGMLFAGFI 286 Parabacteroides...
ADQ18169     236 Fkpneffvhdg----------kggqtdaykqLPGlmmFIIGGQWIVNFNYFGCNQYITQRALGAN-LSTARNGLLFAAFL 304 Leadbetterella ...
EEF77675     232 Ldpsnp---------------------dykyLPGi-gVILGGLWVSALYYFGCNQYIIQRALAGKsLSEARMGLVFAGLL 289 Bacteroides cop...
Feature 1                                                                              #  ##     
2XQ2_A       294 ALIVPFLVVLPGIAAYVItsdpqlmaslgdiaatnlpsaanaDKAYPWLTQFLPv---gVKGVVFAALAAAIVSSLASML 370 Vibrio parahaem...
EDY84464     325 KLIIPFVVVIPGILAYNLfsgdlmnt---------atgefdyDRAFPVLVRNLIkptpwISWFVLAALCGAVISSLASML 395 Verrucomicrobia...
NP_637142    289 KLLMPVVIVVPGIAAVVLapdl-----------------akpDQAYPTMMQLLPt---gILGLVFAALVAAIVASLASKI 348 Xanthomonas cam...
YP_757955    289 KLLIPVIVVVPGIAALYLaqnglldq---------aalddrpDSTYGVLMTLVPt---gVRGLVFAALIAAIVSSLASMM 356 Maricaulis mari...
EDX81380     291 KLLMPVIVVLPGMAALILapnl-----------------sapDQAYPSMMNLLPv---gLKGLVFAALIAAIIASLASKV 350 Brevundimonas s...
YP_001193464 302 KLLMPLIVMLPGIAAYVLytnghlp-----------qlvggkDGAYSAVLTFLPt---gLKGLSVAALTAAIVASLAGKV 367 Flavobacterium ...
AEL28759     299 KLLMPLIVVIPGIAAYVIvnqeidpsfads-mtdpmtgiiksDRAYPTLLQLLPs---gLKGLAFAALTAAIVSSLASMA 374 Cyclobacterium ...
EDN88534     287 KLFIPLLVVIPGIAAFALeapl-----------------eksDEAYPWLLGNLLpv--gVKGVAFAALTAAIVSSLASMM 347 Parabacteroides...
ADQ18169     305 KMLMPFIVVLPGLAAYVLfqenadpaivn---gitdngivrpDNAYPVLLNILPt---gLKGLAFAALTAAIVASLAGKA 378 Leadbetterella ...
EEF77675     290 KLILPLIVVIPGIVAFALdapl-----------------ekpDQAYPWLMHNFIps--gVKGIAFAALVAAVVSSLASMV 350 Bacteroides cop...
Feature 1                                                                                        
2XQ2_A       371 NSTATIFTMDIYKEYispds-gdhkLVNVGRTAAVVALIIAALIAPMLggi---gqCFQYIQEYTGLVSPGILAVFLLGL 446 Vibrio parahaem...
EDY84464     396 NSASTIATMDLYSKFsgek--npakLVKVGRFFVVVFVILAAIVAPMLndl---tsIFAYIQEFQGFISPGILAVFIFGF 470 Verrucomicrobia...
NP_637142    349 NSVATIFTLDFYAKFrpqt--eqkqLVRVGRIVAAVSVLIGILTARPLlgn--fdqGFQFIQEFTGFFTPGVVVIFMLGL 424 Xanthomonas cam...
YP_757955    357 NSISTIFTMDMYRSMrpek--seqhYVGVGRLAAFTAMLIALVLAQPFlgg--mesAFQTIQEYTGFVAPGVVAVFLLGF 432 Maricaulis mari...
EDX81380     351 NSISTIFTLDLYAKIkkdv--pehqLVTVGRISAVAAVVIGILTARPLlgg--fdqAFQFIQEFTGFFTPGIVVIFMLGL 426 Brevundimonas s...
YP_001193464 368 NSISTIYTLDIHKKYiqkea-gekqQVNIGRLAVFAAMLLAVLFTWNDilgiggvgGFTYIQKYTGFISPGVFAMFFLGM 446 Flavobacterium ...
AEL28759     375 NSTSTIFTLDVYKNFfdena-sekkQVRVGRITAIVAFIVAAIVAPALrel---dqAFQYIQEYTGFVSPGVFAIFVFGF 450 Cyclobacterium ...
EDN88534     348 NSISTIFTMDIYRSYfrkea-gqkeLVHTGRWASFGSLLIAVLIAPMLsgl---dqAFQYIQEFTGFVSPGALSIFLAGF 423 Parabacteroides...
ADQ18169     379 NSVSTIYMLDIHKKFfnknl-sekqTVLYGRVAIIISFVIALLISPLLknf---gqGFEYIQEYTGFISPGILCIFLLGF 454 Leadbetterella ...
EEF77675     351 NSITTIFTMDIYKEYfagkdvpekrLVNVGRCFGFFSLVLAVLIAPALagl---eqAFQFIQEFTGFISPGALAIFVMGF 427 Bacteroides cop...
Feature 1                                                                                        
2XQ2_A       447 FWKKTTSKGAIIGVVASIPFALFLKFMp--------------------lSMPFMDQMLYTLLFTMVVIAFTSLSTSind- 505 Vibrio parahaem...
EDY84464     471 FSPRTPRYFGAVGIGTNVVAYGAFKWLlgpwivs--------ngwwyadSMAFLDRMAICFFIVILVGAILTMISPlpka 542 Verrucomicrobia...
NP_637142    425 FWKRANEAGALTAAIGSVVLSFALKILw--------------------pALPFMDRIGVVFVAALVLAVVVSLLTPat-- 482 Xanthomonas cam...
YP_757955    433 FWKRTNTMGAFALLISSVLLSFLFWLLahpaalggvgtnmlavlglaelDLPFVVRIWIVFMLCVGIGVLVSLLTGrpa- 511 Maricaulis mari...
EDX81380     427 FWKRASEAGALTAAIGSVVLSAIFWWLqet----------------gqfIFPFMNRVGVVFVVSLVAAVVVSLLIPa--- 487 Brevundimonas s...
YP_001193464 447 FWKRTTGAAAIVGVILGFVLSVLFNEYapalfgndtllytaypngkgafEIPFHICMGLSFFFTMLVMILMSFAGPkv-- 524 Flavobacterium ...
AEL28759     451 FWKKTTSNAALTAAALTIPLSAAFKFLt--------------------pNLPFIDRMGLVFLIISGLIIAISLVEGkgk- 509 Cyclobacterium ...
EDN88534     424 FYKRATANGALAAALGSFVFSFGLKFLf--------------------pGLPWMDRMGLVFLMCCALIVLLGKKGQs--- 480 Parabacteroides...
ADQ18169     455 FWKKASTGGALAAAILSIPLSALFKYQf--------------------eEMPFLNRMGYVFWICVAAHVIISLIQSkgk- 513 Leadbetterella ...
EEF77675     428 FWKRAEMKGALAAAAGTFVFSLVLMLFf--------------------pEISFIDRMAYVFILCVLLIVVFGLLSGkk-- 485 Bacteroides cop...
Feature 1                                                 
2XQ2_A       506 -ddPKGISVTSSMFvt--dRSFNIAAYGIMiVLAVLYTLFW 543 Vibrio parahaemolyticus
EDY84464     543 vvmPENKEIELKSSg----PAKFWGGMVAL-ATFGLYAVFW 578 Verrucomicrobiae bacterium DG1235
NP_637142    483 -qaRDLIRTKDVAYgt--tLGFKIGAVGVVaILIALYAVFW 520 Xanthomonas campestris pv. campestris str. ATCC 33913
YP_757955    512 enrPVDLSGIRFATe----PVFNLASLVIIaILVAIYIRFW 548 Maricaulis maris MCS10
EDX81380     488 --kPDAMKIKLDQIsyktsLGFNLAAVGVVaFLILVYSIWW 526 Brevundimonas sp. BAL3
YP_001193464 525 --nPKAFETEPGMFkv--kPQTTVLIVITMlIIIALYVKFW 561 Flavobacterium johnsoniae UW101
AEL28759     510 -dhPKGIEISKDLFkt--sTQFKIGAILISgIIAALYIVFW 547 Cyclobacterium marinum DSM 745
EDN88534     481 --aNAYTRHDPALFht--gRMFNVMSVVILaILIGFYYFWW 517 Parabacteroides merdae ATCC 43184
ADQ18169     514 -dnPKAFELKKDWFkv--eKSFVAGAVGVFaVFALIYYIFW 551 Leadbetterella byssophila DSM 17132
EEF77675     486 -tdERAIILEPGLFat--tWTFKLLSGVILaILGVIYYVFW 523 Bacteroides coprophilus DSM 18228

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap