Conserved Protein Domain Family
Bac_RepA_C

?
pfam18008: Bac_RepA_C 
Replication initiator protein A C-terminal domain
This is the C-terminal domain (CTD) that can be found in the conserved replication initiator, RepA,essential for staphylococcal propagation. RepA CTD shared the strongest structural homology to the Enterococcus faecalis DnaD CTD, yet perform distinct functions. RepA CTD shows strong sequence homology between RepA_N plasmids in genus-specific clusters, suggesting that it may perform host-specific functions necessary for replication. The RepA CTD interacts with the host DnaG primase, which binds the replicative helicase. Structural data indicate that the RepA CTD exists as a monomeric entity, flexibly tethered to the DNA-bound NTD.
Statistics
?
PSSM-Id: 436207
Aligned: 7 rows
Threshold Bit Score: 83.6451
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
KRN04058     183 LPKSLVNTLKAYSfNNSDKLYQYAGLIFKAKSVAKKNAERVIG--QATTAF-QFESNSLMTTKLATDIKKIII--TSHRV 257
WP_054658787 162 LPKRLVEILQVYAfGSRDKLYEYASLIFKAKHAVSKRASRFIE--NAYSPF-RFEINHLLTEKLTASMQSIIV--NANRK 236 Apilactobacillu...
WP_056967115 164 LSPKLVNILKVYAfGSRQKLYEYAGLIFKAKNFVYQEAKRCEN--GYGAL--RFEMNASINQQLTTKIKSIII--NANKK 237 Apilactobacillu...
Q5HS39       243 LPQSIQNYLSNFE---VTEIEIIKTVLLKA-KTSFNNTID-----SYYLLE---DMEIEILHVLKRFKAILI---QKNET 307 Staphylococcus ...
WP_002824591 259 LEADTIRLLSLWV-NTPKQMHDYIGIIFNAKKYAQEEIERQLGkpVTIILDeEEELQHDITTALRRAFNSLRKkfDKHEK 337 Lactobacillaceae
A0A3D5       254 LEPEAVQLLSFWC-RTPQQMRRFIGIILNA-KYAVEKEHKDLG--VWILLD-DPDLKKMMTKTLRRYFNALR---SDEKH 325 Lactobacillus s...
WP_007745044 240 LEPTAVKLLSFWC-QTPQQMHRFIGIILNA-KYSVEQDHQDLN--VHIFLD-NPELKTLITKTLRRYFNVLR---SDERH 311 Oenococcus kita...
KRN04058     258 AKNKAAYIMRSLINLFEEQAN 278
WP_054658787 237 AHNPNGYIMRACMQLFDEQAN 257 Apilactobacillus ozensis
WP_056967115 238 AHNVNAYIMRALTTFFEENSN 258 Apilactobacillus ozensis
Q5HS39       308 VEAMQGYLMKSLKSEFAEMHT 328 Staphylococcus epidermidis RP62A
WP_002824591 338 VNSVEDYLFITMVNTFQYWYN 358 Lactobacillaceae
A0A3D5       326 IKNVENYLYGTMQNLFGVWWN 346 Lactobacillus salivarius UCC118
WP_007745044 312 VQDVENYLYGTMKNLFGTWWN 332 Oenococcus kitaharae
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap