Conserved Protein Domain Family
Met_dep_hydrolase_C

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cd01309: Met_dep_hydrolase_C 
Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Statistics
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PSSM-Id: 238634
Aligned: 17 rows
Threshold Bit Score: 367.407
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:
  • Comment:active site is based on homology to other members of the amidohydrolase family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            # #                                         
NP_142031     25 DKDIVNItrek----pkdvEVVAEGVv--tPAFIDAHSHIGmdrygepyqeselneqmdsvlpladalySIYMDDKAFKH 98   Pyrococcus hor...
NP_864177    750 DGRIVAVeehitvptgddcTIIDASGkhitPGLIDCHSHAAtdgginesgq--------vvtaevrigdFIDHTDITIYR 821  Pirellula sp. 1
ZP_00000358   24 EGDTITEvtet----kpygEIIGEGVi--tPAFIDPHSHIGldrageppyeseandkldsmlplaraidGVYMDDHAFTE 97   Ferroplasma ac...
NP_229522     28 NGKVEKVgenie---dpdaEIVDLTGkflfPGFVDAHSHIGlfeegvgyyysdgneatdpvtphvkaldGFNPQDPAIER 104  Thermotoga mar...
XP_325683    148 IKKVESDiaast--lpkgtHVFDAKGrpltAGIIDMHSHAGvdslpsldgnedtnelsaditpfvrsidGIQPNDHQIQV 225  Neurospora crassa
NP_718704      3 NGRIEKIgqqlt--tpsgyQVLDATGkhvtAGIVDEHSHIAinggtnegtd--------avtaevrigdVINPEDVSIYR 72   Shewanella one...
NP_420779     89 EGKITAVggpdtp-ipagiVVIDAKGkwitPGIVDAHSHLGvypspgvsarsdgneatdpntaqvwaehSVWPQDPGFNR 167  Caulobacter cr...
NP_638717    107 DGKVAAVgrgle--vpadaRRIDGTGkwvtPGIIDVHSHLGvypspgvsahsdgnemtapvtpnvwaehSVWPQDPGFGT 184  Xanthomonas ca...
NP_243874     26 DGKVLEVgqrvd--tpanaKLIDATGkyvtPGLIDVHTHIGvfseglgrtghdfnettaaatpyiraidGIYPFDQGFED 103  Bacillus halod...
NP_864178     64 DGLISEVgasvr--lpesaQVIEGAGkhvyPGLIDAYTDLGlreitavdvtidnv-ergelnpnvrswvAFNPDSELIPV 140  Pirellula sp. 1
Feature 1                                                                                        
NP_142031     99 SIEFGVLYSSILPGSGNIIGGkgvlIRNYgrdie------------dafikYVGVKAAFGYNPRsttnw---kglrPSTR 163  Pyrococcus hor...
NP_864177    822 QLAGGVTTANVLHGSANPIGGqnqvVKFRwgdsmdd---------frfkdaPLGIKFALGENVKrst------sryPNTR 886  Pirellula sp. 1
ZP_00000358   98 SVESNVLYSVVLPGSGNILGGmgslIRNFekntk------------dafvrDIGVKMALGYNPRsttew---kgtrPTTR 162  Ferroplasma ac...
NP_229522    105 ALAGGVTSVMIVPGSANPVGGqgsvIKFRsiivee-----------civkdPAGLKMAFGENPKrvyge---rkqtPSTR 170  Thermotoga mar...
XP_325683    226 IKSGGVTTSLVLPGSGNNMGGeayaIKLAvgkpdgrnetsatdmladpernWRFMKMACGENAKrvygr--vgeqgPTSR 303  Neurospora crassa
NP_718704     73 ALAGGVTSAQLLHGSANPIGGqsqlIKMKwgesaeq---------lkfanaPASIKFALGENVKqsnwgekfvqrfPQTR 143  Shewanella one...
NP_420779    168 ARAGGVTTLLVLPGSANLFGGrsvtLKNVpsltmqg---------mkfpgaPYGLKMACGENPKrvygg---rgrsPSTA 235  Caulobacter cr...
NP_638717    185 ALAGGITSLQVLPGSANLIGGrgvtLKNVaattyqg---------mkfpgaPWGLKMACGENPKrvyg----ekggPATR 251  Xanthomonas ca...
NP_243874    104 ARQSGVTTVQIMPGSANVIGGemvtVKTAgtvvde-----------mivraPSGMKAAFGENPKnvhgg---kgklPATR 169  Bacillus halod...
NP_864178    141 GRSGGVMLAHVVPGGRLLQGQsg-vMQLDgwsyqd-----------mllegPVGLCVNWESVVPrggd-----skeKAER 203  Pirellula sp. 1
Feature 1                                                                             #          
NP_142031    164 MGAIGIlfn-wliKTKKTIsllekgk------------------kdpeeiDPVIEALIPVLkgempLRVHAHkeDDIAVL 224  Pyrococcus hor...
NP_864177    887 MGVEQLlrd-qllAAREYAsahrrwnsg-------------erntlpprvDLQLQTLVEIQdgkrwIHCHSYrqDEIMAT 952  Pirellula sp. 1
ZP_00000358  163 MGVAAIire-nflSAQKAAnlmnngk------------------ktideiDPKTEFFIKLIngeykIMCHLHkeDDALFL 223  Ferroplasma ac...
NP_229522    171 MGTAGVird-yftKVKNYMkkkelaqk---------------egkeftetDLKMEVGEMVLrkkipARMHAHraDDILTA 234  Thermotoga mar...
XP_325683    304 MGESWEfrh-afeQATKLVraqddwcdaata-------vgvqkmkgylpqELKWESLGALLrgqihLNTHCYtiPDLEAF 375  Neurospora crassa
NP_718704    144 MGVKALfee-tfdAALAYEnalkdyddlrs---------sekkktlaprpSYRLQAVAEVLkqqrdVHIHSYvqSEILMF 213  Shewanella one...
NP_420779    236 MANVFGfrk-awiDAADYArkwddyrakva----------kgekadapkrDLQMETLAGVLkgeilVQNHCYraDEMAVM 304  Caulobacter cr...
NP_638717    252 MGNVAGyra-afiDAAEYLnknapkksekkrhwwsgggdndssgdaggkrDLKLDTLAGAIngdirVHIHCYraDEMATM 330  Xanthomonas ca...
NP_243874    170 MGVAALfrq-qlyQAQDYLkrfekg--------------------elekrDLGMEQLAKVLrkeipLRVHAHraDDIATV 228  Bacillus halod...
NP_864178    204 YDEQIQelddlfeRARRYGesiaae--------------------esvatDVRLESLLPVIngerpVFVEADrlGAIESA 263  Pirellula sp. 1
Feature 1                       #                                                               #
NP_142031    225 LMIKRKFNLK-VTVEHAadvhskeTFEKIkregVPLVYGPldahpykv-----elkhedwkNAKYLLevk--pfFGLMSD 296  Pyrococcus hor...
NP_864177    953 LDVLDEFGIRiGTLQHIleg--ykVADRMaehgAMASSFAdwwaykf-------evydaipYNGVLMhnk-givVSYNSD 1022 Pirellula sp. 1
ZP_00000358  224 MSLVDQFGIK-PIINHGmdfhsekIFEEIkkrdLSLVYGPldshpykv------elkhetwRNAELVkks-gvrFALISD 295  Ferroplasma ac...
NP_229522    235 IRIAEEFGFN-LVIEHGtea--ykISKVLaekkIPVVVGPlltfrtkl-----elkdltmeTIAKLLkdg--vlIALMCD 304  Thermotoga mar...
XP_325683    376 VDHTNEFKFK-VRAFHHahq--tyLVPEIlk-rAYGGDPPasaifadnmyykaesyvgsefAGKYLWdnd--ltPIYVSD 449  Neurospora crassa
NP_718704    214 LRLAEAYRFKvQTFTHVleg--ykVASELaahgAGASTFAdwwaykf-------evydaipQNACLMqkq-gvlTSINSD 283  Shewanella one...
NP_420779    305 IDIAREFGYK-ITMFHHaie-sykLAPVLakeeICSATWAswtgfkm-------esldgidANAAILakn-gacVVIHSD 374  Caulobacter cr...
NP_638717    331 LDLAKEFGFH-IAAFHHgve-aykLADRLaqenVCGALWAdwwgfkm-------eafdgiqENIAIVdrpanscAIVHSD 401  Xanthomonas ca...
NP_243874    229 LRMVDEFDLE-ATIEHCteg--hlIADHIakynVKVSVGPtmtsrtkq-----elvnkgwhTLIELEkhg--ipFSITTD 298  Bacillus halod...
NP_864178    264 IAFFTSRQIP-MVICGGada--mhCVEHLtahdIPVILVAtyrlprrrs----dpvnalysLPSKLReag--vrFAIAGE 334  Pirellula sp. 1
Feature 1                                                                                        
NP_142031    297 HPfs-----iQANLYLQLRHFIRLGMsk------aeAIKLITYNNAKILGIEdkLGSLEKGKWASLVVWNGDPFnlenyp 365  Pyrococcus hor...
NP_864177   1023 DAe------mGRHLNTEAGKAVKYGGvpp-----teALKFVTLNPAKQLRIEdrVGSIEVGKDADLVVWSGPPMsttsrc 1091 Pirellula sp. 1
ZP_00000358  296 HPvi-----lQRNLFLTTRHFMRFGAsk------eqCISYVSSRPAQILGLDn-LGTVEPGKLASFSIWNKDPFeldayp 363  Ferroplasma ac...
NP_229522    305 HPvi-----pLEFATVQAATAMRYGAke------edLLKILTVNPAKILGLEdrIGSIEPGKDADLVVWSGHPFdmksvv 373  Thermotoga mar...
XP_325683    450 NPvl-----nAQHVLFEAAKGHKYGLpy------haALASVTTAPAERLGFGnrLGKIKPGFDADVVVWDSDPLevgatp 518  Neurospora crassa
NP_718704    284 DYe------mQRRLNQEAAKSMMYCGmsk-----edAWNMVTIYPAKQLRVDeyVGSLTPGKMADIVLWNAEPLsiyakv 352  Shewanella one...
NP_420779    375 DPi------mTQRLNQEAAIAMTAGAklginipraeAIKWITANPAKAMGIGdkTGSIEPGKAADLVVWSRDPFsvyaqa 448  Caulobacter cr...
NP_638717    402 SEe------gIQRLNQEAAKVIANARragmeipperAIRWLTSNAAKALGIEqqTGALEPGKMGDMVVWNGNPFssyala 475  Xanthomonas ca...
NP_243874    299 HPvv-----tINHLVTSAIQAVKAGLse------qsAFQAITLRAAEHIGVEqqVGSLEKGKDGDFVIWSDHPFtataqv 367  Bacillus halod...
NP_864178    335 GSgypggasnIRNLPYHAGVAVAHGLpr------eeAVRAITQSAAEILGVAdrVGTLTAKRHATLIVVDGDVLesdtrv 408  Pirellula sp. 1
Feature 1                   
NP_142031    366 thVFAEGELIH 376  Pyrococcus horikoshii
NP_864177   1092 eqTWIDGRPMF 1102 Pirellula sp. 1
ZP_00000358  364 amVFGEGKLVH 374  Ferroplasma acidarmanus
NP_229522    374 erVYIDGVEVF 384  Thermotoga maritima
XP_325683    519 vqVWIDGTAQF 529  Neurospora crassa
NP_718704    353 thAWVEGKRYF 363  Shewanella oneidensis MR-1
NP_420779    449 eqVYIDGALTY 459  Caulobacter crescentus CB15
NP_638717    476 eqVYIDGAQVY 486  Xanthomonas campestris pv. campestris str. ATCC 33913
NP_243874    368 eaTYINGKCVT 378  Bacillus halodurans
NP_864178    409 idAYVQGRKVD 419  Pirellula sp. 1

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