Conserved Protein Domain Family
RnmV

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COG1658: RnmV 
5S rRNA maturation ribonuclease M5, contains TOPRIM domain [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 441264
Aligned: 157 rows
Threshold Bit Score: 75.4476
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013485952   1 M-------------------------IHIREAVIVEGKYDKIKLSSL-I--DAVIIETDGF-AIfkDAEKlALI-RRLAE 50 
YP_193141      1 Mvl---------------------nrKNFDAVIVVEGKDDTIRLKQF-Fp-GIETVETNGS-AV--SDAVlNQL-KKLSK 53 
WP_002817622   1 Ma-----------------------qELKKTIFIVEGKNDTARLRLA-FgdSIETIETGGS-KI--RSAVlDLI-EQSAR 52 
WP_012241989   1 ---------------------------MKQKIYVVEGTHDETLLKQI-Dp-NIRTVSVGGS-QI--KEDViQFL-KTYED 47 
WP_012282329   1 Mntl--------------------srEKIREVIVVEGRDDLLAVRRA-V--DAQVIVTQGL-GI--SPETmAVI-GRAQE 53 
WP_013638448   1 MnskkiniekikmlknllldlkefslKNEKWAILVEGKRDKFALEKFsI---QNVVELKGK-NY--HDIA-E---ELSAI 70 
WP_014463062   1 Mtd---------------------srPKLREVVVVEGLHDKQRVDEA-V--DAEVLILGGD-RV--SRRTvDLL-RRAVE 52 
WP_003774259   1 Mn-----------------------kLKIQEVIVVEGKHDKEKILKC-V--DADVIMSSGT-HM--SAEFlTLC-KRMNE 50 
WP_052727643   1 M-------------------------INIDGIVVVEGKDDKTAVSRV-Iq-PDNIYILNGMsGA--NQKKiDDL-KRLAK 50 
WP_082861332   1 Mimnl------------------sftGGAMTGYIVEGKSDQLRVQSVhP--HAHFVILNGI-SF--RHKErRAIeEALIL 57 
WP_013485952  51 KRGVLILTDSDAAGFKIRGFLSGALPtgqVRHAYMPdifgkeKRKTAPs-KE-GKLGVEGIPpDVIVQsLARAGVLAE 126
YP_193141     54 TRQIIVFTDPDFNGERIRRIVTNAVPs--AKQAFIT------RKEGEPh-KK-GSLGVEHASkEAIERaLKDLHEVDP 121
WP_002817622  53 DHELILLTDPDFQGERIRKIVLERVPn--IKQLFLN------KIDGKP--NHkGSLGVEHADpKLLKKlLGKYVKEFS 120
WP_012241989  48 KFQIILLLDPDYTGEQIRKRIAKHLTn--PTHIFVQ------KHKAIS--KNkKKIGVEHLSlEDLKTmLLHEVQELP 115
WP_012282329  54 RCGVIVFTDPDGPGERIRRWVTEAVPg--AKHAFLP------VALAK---KD-GKVGIEHASpQAIREaLAKVRSPGT 119
WP_013638448  71 YEGVVLLMDFDPEGETIFEKLSKLLA---GYGLRIDts---fRERLREt----GVKFVEKIP-QSLf--FSN------ 129
WP_014463062  53 VRGAIVLTDPDGAGERLRRRLDQLVPg--LLHAHVR------RASAA---SS-RGIGIEHASaEDVRQaLIEARGRET 118
WP_003774259  51 DRGIIVFTDPDGPGEMIRRRIIETVGs--CKHASLH------VLQTK---KK-QKVGIEHADcDDIVEvLSTCSTFAL 116
WP_052727643  51 NNKIYILTDPDFAGKKIREKIKENIPt--AIDIYAS------KYLAT---KK-GNVGIENMSeDDILDlFQNIHEKKN 116
WP_082861332  58 CDEVYVLTDPDEPGDKIALKIMETYPe--IKRIHID------PKKARNvrESrYKYGVEYCSnQYLKEtLPGi----- 122
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