1PS9,1ICP,1O95,1OYB,1Z48


Conserved Protein Domain Family
OYE_like_FMN_family

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cd02803: OYE_like_FMN_family 
Click on image for an interactive view with Cn3D
Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Statistics
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PSSM-Id: 239201
Aligned: 108 rows
Threshold Bit Score: 248.641
Created: 20-May-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1OYB; Saccharomyces pastorianus OYE binds FMN and P-Hydroxybenzaldehyde
  • Citation:PMID 7881908
  • Structure:1ICP; Solanum lycopersicum OPR binds FMN, a sulfate ion, and nonaethylene glycol
  • Structure:1Z48; Bacillus subtilis YqjM binds FMN
  • Comment:Note that in 1Z48 an arginine finger (R336) at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is involved in substrate recognition
  • Comment:Substrate binding site based on 3 substrates: sulfate, pHBA, and pNP
  • Structure:1PS9; E. coli DCR binds FMN, a 4Fe-4S cluster, and 2,4-decadienoyl-CoA
  • Comment:NADPH and FAD also play a role in the electron transfer pathway
  • Comment:Electrons from NADPH pass through FAD, 4Fe-4S, and FMN to reduce the substrate
  • Structure:1O95; Methylophilus methylotrophus HD binds cofactors FMN and a 4Fe-4S cluster
  • Citation:PMID 2545689

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         # #                                  #                        
1PS9_A        6 FAPLDLGfTTLKNRVLMGSMHTglee---ypdGAERLAAFYAERARhgvALIVSGGIAPdltgvg---meggaMLNDA-- 77  Escherichia coli
1OYB         18 FKPIKIGnNELLHRAVIPPLTRmralhpgnipNRDWAVEYYTQRAQrpgTMIITEGAFIspqagg---ydnapGVWSE-- 92  lager yeast
AAD35513     34 RDLVDLGsKTIPNRFVDQPMEGndaq--ldgtPGPLTLRRYRKLAEggaGVIWVEAIAVsrear----gndrqLMLTE-- 105 Thermotoga marit...
CAD72003     41 AQSFEVHgQTVGNRWSILPMEGwdgt--tdglPTDLTRRRWRNFGLsgaKLIWGGEAVAvrhdgr---anpnqLLLTEkn 115 Rhodopirellula b...
CAH09227     10 FTPVTIGpLTLRNRTIRSAAFEgmcp---gnaPSPMLLDYHRSVAAggvGMTTIAYASVtrsgl----sfprqLWLRP-- 80  Bacteroides frag...
YP_295785    12 FAPVRIGpLTLRNRFIKAGANEgmtp---eglPTQALVKHHADLAAggvGMTTVAYAAVad-----------dGLTFAhq 77  Ralstonia eutrop...
YP_372382    22 FSPLQIGpLTLRNRLIKSATNEgmtp---ngvPSRALVRFHERIAEggaALTTVAYCAIsd----------dgRTFVDqa 88  Burkholderia sp....
ZP_01091357  42 ADTLAWGpLKAGNRWTIHPMEGwdan--hdgtPTELTIRRWRNFGLsgaKMIWGGEAAAvqpdgr---anprqTMAIDsn 116 Blastopirellula ...
ZP_01606254  36 SAPLTINsVTLPNRIVMGPMAAnspe--pdgrPGDQTVAFFERRARggvGMIIAGGVNStrrsyeetwfrpllRLETD-- 111 Sphingomonas wit...
ZP_01610834   5 FTPVTVGpVTLPNRFIRSGANEmmtl---rsiPTRSLLEFHRRLAAggvGMTTLAYIAVspdgr----tfagqGVLDA-- 75  Sphingomonas wit...
Feature 1                                         #                                             
1PS9_A       78 -----SQIPHHRTITEAVHQe-------GGKIALQILHTGrysyqphlvapsal-------------------qapinrf 126 Escherichia coli
1OYB         93 -----EQMVEWTKIFNAIHEk-------KSFVWVQLWVLGwaafpdnlardglrydsasdnv---fmdaeqeakakkann 157 lager yeast
AAD35513    106 -----ETVNSFRSFVAEIKSvslktknfEPYIVAQLTHPGrfgknrkilfhdkfl-----------------dekygite 163 Thermotoga marit...
CAD72003    116 ----lSAIASLRQELVDEHEshfs-rsdDLLVGLQLTHSGrfsrpnikslteprtvqrn----------vvldrrvkitd 180 Rhodopirellula b...
CAH09227     81 -----EIIPGLREVTAAIHAe-------GAAASIQIGHCGnmshksicgvtpisas---------------sgfniyspt 133 Bacteroides frag...
YP_295785    78 lsmraEQVPHLRVLTDAVHRe-------GAAACLQITHAGsfttmrhggsrapgsastg----------lnafgmmhgvy 140 Ralstonia eutrop...
YP_372382    89 r-ldvPTVRQFRALTDAVHRh-------GAAASAQITHGGcftflpslstrrplsasgg----------lnkvgvmsgrf 150 Burkholderia sp....
ZP_01091357 117 ----iAGLAQLREAAAAAHQesfg-sadDLIIGLQLTHSGrfcrplpdhqlrpriayhhp--------lldakfhiaagd 183 Blastopirellula ...
ZP_01606254 112 -----EFLPEFRKVADAVHAh-------DIPLIAEIMPGFgrmgvpgktrpiisaspmnvvipeqnfpngvivpggrstp 179 Sphingomonas wit...
ZP_01610834  76 -----ASVPHYRAIADAVHAe-------GALISAQITHGGsfvqhkelstpramsssgg----------idkmgvlmgrf 133 Sphingomonas wit...
Feature 1                                              #                                        
1PS9_A      127 vphelshEEILQLIDNFARCAQLAREAGYDGVEVMGsEGYLINEFLTLrtNQRSDQWGGdyrnrmRFAVEVVRAVRervg 206 Escherichia coli
1OYB        158 pqhsltkDEIKQYIKEYVQAAKNSIAAGADGVEIHSaNGYLLNQFLDPhsNTRTDEYGGsienraRFTLEVVDALVeai- 236 lager yeast
AAD35513    164 dfplmsdEELDSLKEQYLRAAKFAKTAGFDAVDIKAcHRYLLSELLAA--HTREGKYGGsyenrtKLLKDIVRLVRkev- 240 Thermotoga marit...
CAD72003    181 dsaifsdDELSTLIDDFIAAAVRAEKAGYRFVDVKHcHGYLGHELLAG--RERTGKFGGsfenrtRFLRDIVSGIEaat- 257 Rhodopirellula b...
CAH09227    134 wvrgmkrEELPEMAKAYGRAVCLAREAGFDAVEVHTgHGYLISQFLSPytNHRKDEYGGslenrmRFMTMVMNEVMkaag 213 Bacteroides frag...
YP_295785   141 fqramsqADMSRRAAQFAQAARLAREAGFDAVEIHMgHGYLLNQFLSPlsNRRRDMFGGsvenrtRFPAMVLRQVKdavg 220 Ralstonia eutrop...
YP_372382   151 lkqamtrDQMSTIADEFAQAARHARDAGFDAVEIHMgHGYLLSQFLSPlyNRRRDAYGGdatrraTFPVEVLRRVLdavg 230 Burkholderia sp....
ZP_01091357 184 dtvvwsdEELEGLIDSYVNAARLAREVGYQFVDVKAcHGYLLHEFLGA--RLRTGKFGGdfagrtRLLKTIIQRIKsel- 260 Blastopirellula ...
ZP_01606254 180 vpdeasiAEIEAFEQEMILTAERAMRAGWDGVEVAAhMSYFASSFLSPrtNWRTDRYGGsvenraRFLVNIVAGIRrklg 259 Sphingomonas wit...
ZP_01610834 134 fqrrmtrADMDMVRDEFVAAARLAVEAGFDAVELHMgHGYLLNQFISPlsNKRRDAYGGnagkrvRFPAEVLAAVKravg 213 Sphingomonas wit...
Feature 1              #                                                                        
1PS9_A      207 ndfIIIYRLSMLDLvedg------------------------------gtfaETVELAQAIEAag-----aTIINTGIgw 251 Escherichia coli
1OYB        237 gheKVGLRLSPYGVfnsmsgg------------------------aetgivaQYAYVAGELEKrakagkrlAFVHLVEpr 292 lager yeast
AAD35513    241 -eiDITVRLNLSDFipypygwgs--------------------teegtldftEPGRLLKELEElg-----vKIINVTAst 294 Thermotoga marit...
CAD72003    258 ndlKIGVRLSLFDFlpyhpgpdrvgepepgge---pnkvfgggedgltidmtETSKLVELMHEig-----iRMICTTAgs 329 Rhodopirellula b...
CAH09227    214 kdlAVFVKMNMRDGfrgg------------------------------meieETLEVARRLESlg-----aHALVLSGgf 258 Bacteroides frag...
YP_295785   221 aemAVCCKLSVTDGvpgg------------------------------ndaaDSAITARILEAeg-----aDLLTLSGgr 265 Ralstonia eutrop...
YP_372382   231 rdlAVVCKIGVTEGvrgg------------------------------gtadDACEIARRLEAeg-----aHLLVLSGgm 275 Burkholderia sp....
ZP_01091357 261 pglEVGVRLSAFDFvpyqqgdavgepmdftdclpyrcgfgsnpnnpleidlaEPIQLIRELGElg-----vIGVNITCgs 335 Blastopirellula ...
ZP_01606254 260 nhfVVGLRIIANDYmeps------------------------------pgpeGFAAIAKKVEEag-----iDYVALSTgc 304 Sphingomonas wit...
ZP_01610834 214 driAVLAKINLYDGakgg------------------------------atveDGIVTARALEAag-----aDMLVLSGgr 258 Sphingomonas wit...
Feature 1                                                                                       
1PS9_A      252 heariptiat--------------------------------pvprgafswvtRKLKGhv-sLPLVTTNRIn----dPQV 294 Escherichia coli
1OYB        293 vtnpflte-----------------------------------gegeyeggsnDFVYSiw-kGPVIRAGNFal---hPEV 333 lager yeast
AAD35513    295 pylkphinrpydemgk-------------------ynppehpivgamrllnlaKLAKEtlskTLVVASGFTwfrqfaPYV 355 Thermotoga marit...
CAD72003    330 pytnphiqrpayfppsd-----------------gytppedplagvarqieavAEMKKqhpeMIFIGSGYTylqdylPNV 392 Rhodopirellula b...
CAH09227    259 vskapmyvmrgampiktlthymdcwwlkfgvklagrmmiptvpfkeayfledaLKFRSei-kIPLIYVGGLv----sREK 333 Bacteroides frag...
YP_295785   266 nvespwalfgspmptaqmkaaapnamarfgitmlekrtprdltfrelyfleasRVVRQav-qMPLAYIGGVk----sLQN 340 Ralstonia eutrop...
YP_372382   276 nvesvwqlfgsplpgearanadnai-vrtamalqkltepkmgafremyflehsKKVRAav-rMPLAYLGGVr----sRGN 349 Burkholderia sp....
ZP_01091357 336 pyynphiqrpaifppsd-----------------gyqppedpligvarmidvaRRCKAaapdVTMVATGFTylqdylPHV 398 Blastopirellula ...
ZP_01606254 305 yermadsapm--------------------------------vdgalidsgdaMIFKKal-sVPVLLQGLHd-----PMN 346 Sphingomonas wit...
ZP_01610834 259 niessyvmfssplpyddlakmqggwlaklqfkllkmatpktvrfselyfldaaRRVRAav-gCRLGYLGGVl----sLPA 333 Sphingomonas wit...
Feature 1                      ##               
1PS9_A      295 ADDILsrgdADMVSMARPFLAdAELLSKAQSG 326 Escherichia coli
1OYB        334 VREEVkd-kRTLIGYGRFFISnPDLVDRLEKG 364 lager yeast
AAD35513    356 AAGMLkngwCDFVGFGRMTFAyPDYPKDILTK 387 Thermotoga maritima MSB8
CAD72003    393 AQAVVkaemADSIGLGRMVLSyPDLPADVTAG 424 Rhodopirellula baltica SH 1
CAH09227    334 IDEVLne-gFEAVQMARALLNePGFVNRMRRE 364 Bacteroides fragilis NCTC 9343
YP_295785   341 VDALLge-gFDCIALARALIHdPALVEHWRNG 371 Ralstonia eutropha JMP134
YP_372382   350 VELAMre-gFDAVALARALVFePDFVNGLRDG 380 Burkholderia sp. 383
ZP_01091357 399 AQAIVragwIDSVGLGRMVLSfPELPAATLQE 430 Blastopirellula marina DSM 3645
ZP_01606254 347 AARAIaeghGDAVMLARQMLAdPDYARKATDG 378 Sphingomonas wittichii RW1
ZP_01610834 334 AEQALne-gFDAVVMARALVHdPALVAKWRAD 364 Sphingomonas wittichii RW1

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