Conserved Protein Domain Family
RqcH_arch

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NF041120: RqcH_arch 
ribosome rescue protein RqcH
This HMM (built with support from arCOG01695) describes archaeal homologs of the RqcH (Ribosome-associated Quality Control H), involved in release of defective mRNAs that lack a stop codons and so are stuck on ribosomes. Conservation of a role in ribosome rescue for this archaeal family is supported by presence in a conserved gene neighborhood with homologs of Pelota/Dom34 and ABCE1/Rli1 homologs, proteins involved in splitting the ribosome into large and small subunits.
Statistics
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PSSM-Id: 469043
Aligned: 101 rows
Threshold Bit Score: 489.027
Created: 11-Oct-2024
Updated: 3-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_020445405   8 ASVDLRALVGELGG-YEGAIVDKAYLYgddLLRLRLRDHDRGRLELLIEVGEQKRIHMADpdLVPDAPGRPPNFAKMLRN 86  Salinarchaeum s...
WP_048099995   2 SYIDLLAWIVENRSkIIGCRIDNIYSVg-nLENLFLLRIHCKDGDKSLILEPGVRIHLTK--YEREK--TLSNKAKILRE 76  Candidatus Acid...
WP_010922912  15 TYFDLIAWITENKKaIEGCIIDNVFLIq-nTQNTYILKLHCSGRDQELIIEPSKRINITK--YNYPK--ISSTKITELRR 89  Saccharolobus s...
WP_069282531  15 TYFDLLAWLRENKNeLENCIIDNIYEVq-nAENSFIIKLYCNGKDKELLIEPGRRINFTR--YNYPK--SSSGKAILLRE 89  Sulfolobus sp. A20
WP_011752412  12 SVLDLAKMW-RLLAgFEGERVSRVAQSg------dVFLLRFRRGALVFSAARGVAPCVEE--CTLPG----SWEKPRWAG 78  Thermofilum pen...
WP_020962671  13 SILDLAKIW-PLIReFEGTRLQKVSERg------nVFYFRFREGGIVFSPRRGLVPAESD--SVFPV----EFGKTRWSS 79  Thermofilum ado...
WP_052884365  11 SVLDLYKIW-DLLEsLEGSRIKRALEYk------gVYVIQHSNGILLFSPKRGVSPLSED--IELKN----PVR-SRLLH 76  Thermofilum uzo...
WP_048186720   4 AGIELAFLVKEISDqTSDYYVNNIYSIn---qNSILFKLHHPEKPDLFLVVSSIGIWFTG---IKIEALEPNKLVKRLRD 77  Candidatus Nitr...
WP_042683926   4 AGIELHYLVNEISKkADGYYVSNIYGIn---rESILFKLHHPERPDLFLVLSTIGMWLTN---IKIDQIEENKMVKRLRD 77  Candidatus Nitr...
WP_048197205   4 AGIELTFLVKEIARaADGYYVNNIYAIn---rNSILFKLHHPEKPDIFLVLSTIGMWLTG---IKIDQIEENRMIKRLRD 77  Candidatus Nitr...
WP_020445405  87 RMSGATFEGIEQHGFDRILKLDFERTDSDTSIVAELFGDGNIAVLDENGSVVDSLETVRLHSRTVAPGSKYEYPEARVDP 166 Salinarchaeum s...
WP_048099995  77 LIRDRIINDISAVNEERIVKILLSDGK---ELILELLPRGLLVITD-NGKIKFSTQYKEFKDRIIKPGLQYILPPQ---- 148 Candidatus Acid...
WP_010922912  90 LIRGDIITNMYVLNKERILILKLKRDDK--KVIVELLPRGVLVIADKDGKILFASEYKEFKDRLIRIGEIYKPPPSIE-P 166 Saccharolobus s...
WP_069282531  90 LIRGNVISEVNIVDSERILVMTLKKNGI--KLIVELLPKGLLVITDNENKILFSTEYKEFRDRKIFLGEQYITPPKPQ-I 166 Sulfolobus sp. A20
WP_011752412  79 EVEGRRVEAVEQVSGDRVVAFELGPRR----LVLEWVREGNLLLLDGGGRILRALRQREMRDRALKPGHQYVPPPRVGDA 154 Thermofilum pen...
WP_020962671  80 RIEGKRLESVAQIAGDRVVCLDFEKEK----VVLEWVREGNLVLLDGESKIVYALEPKEMRDRTLKPGETYRPPPRLGDI 155 Thermofilum ado...
WP_052884365  77 EIEGRRIREVSIINEDRVLALDLYSAT----LVLEWVREGNVVLLDHEGRIQAAAAQKTMKDRTVRRGEPYKPPPRLGDV 152 Thermofilum uzo...
WP_048186720  78 DLLRLKLNKIEQIGVERIAYLRFSGFDKEFVLICEFFGDGNILLCNKDLKVLALLHSIEVRHRELHVGSTYVPPPQKGLN 157 Candidatus Nitr...
WP_042683926  78 DLARLKITKIEQIEVERIAYLTFSGFDKEFILICEFFGDGNIILCNKQMKILALLHSIEVRHRELHVGVTYTPPPLNGLN 157 Candidatus Nitr...
WP_048197205  78 DLLRMKITKIEQIGVERIAYITFSGFDKEFVLICEFFGDGNLLLCDSNLKILALLHSIEVRHRELKVGMTYAPPPQMGLN 157 Candidatus Nitr...
WP_020445405 167 LSLSYEAFVEHMDAS-DTDVVRTLATQLDLGGEYAEELCARAGVEKELPIAEADDSVYEPVYDALQWLADALETAaldpr 245 Salinarchaeum s...
WP_048099995 149 --------------------KGGRSDSLGVPKEILQALGITQNn-------------LDDVKSKVEDLKEKIIEGk---- 191 Candidatus Acid...
WP_010922912 167 NIDEIEKLIK----------KGNIAKGLGIPQEVANYLSLQDSt-----------pDINVIREKIRNLEISIINGe---- 221 Saccharolobus s...
WP_069282531 167 SDEEMEKLLK----------KGNLTKLLGISQEVLIYLDVKEVn----------kNNLEDIKEKIRKLEEEIKNGn---- 222 Sulfolobus sp. A20
WP_011752412 155 FSDDPGYLYAKLGEYsGRAAVTAVSLVASLPAELVYEAMYRLGldpsakARALGEDAFRRVLSKSVEIFEEALADpdr-- 232 Thermofilum pen...
WP_020962671 156 FSEDIEKLYESFRSMpKRGAIVAFSLVTSLPPDLVAEAMYREGisldakAGSLLFSHFRSVATKGIEIFLESLKDpsr-- 233 Thermofilum ado...
WP_052884365 153 SR-SPSEIVELASRLsRRSIISALAYALSLPPELIYEAAYRQGletaspG--IDVKDIIRIVETARNIYLESIERkee-- 227 Thermofilum uzo...
WP_048186720 158 IFDITPDNFAELKTVst-pIAKWFGRTFGLPTKYAEEILRTAKINSELNgQSITDDDISSIVSAAKTITGNVVSGnhtp- 235 Candidatus Nitr...
WP_042683926 158 VFKISEKDFQEISSVst-pVIKWVGRTLGLPAKYAEEIISIAKIDPNTPgRDLTNENITAIIDATNHLVHRVASGdhqp- 235 Candidatus Nitr...
WP_048197205 158 IFDINEKNFDEARSVtt-pIARWLGRTFGLPAKYAEQILNLAKINLETPaDHLTHDDIKQIVQVASTLTKRIVSGqhep- 235 Candidatus Nitr...
WP_020445405 246 vyyadpedgggadaagegdgrqRGQPVDVTPVPLADHenlASEPHDSFNAAVDAYFHELESYEADAGGaAGEpdrpdfeG 325 Salinarchaeum s...
WP_048099995 192 -----------------------ITPCLKTGQTFMPIrfdDCIEKNTFNDAIDDYFIEIEKDQF-TENtSQEl-----aN 242 Candidatus Acid...
WP_010922912 222 -----------------------IKPCLVEDTTVVPFyldGCKEYQRFNDAIDDYFYTITQKEL-SEKtSKKi-----sE 272 Saccharolobus s...
WP_069282531 223 -----------------------IKPCILDNLTVIPFlinNCKSYEKFNDALDDFFYTIAQEEL-EQKkSREi-----lE 273 Sulfolobus sp. A20
WP_011752412 233 -------------------gfrVSGE----VYAFNPEhlgAGAEEVSFAREFPAYVLGLIKRDLQP-EeGAGa-----qE 283 Thermofilum pen...
WP_020962671 234 -------------------gyhAGGW----VYSFKPThvtTDFVEVEFQKAFPEELLRRIIADITP-ReQTv------sS 283 Thermofilum ado...
WP_052884365 228 -------------------gfkTTIEGKVLIYPFEPFhlkAGFEKIEYPKHFPSYVASLMLSDSSAGEiEASp-----vE 283 Thermofilum uzo...
WP_048186720 236 ------------------vivkSGENLDVYPVVVS-IpdsEQESIPSFMEGLDKIFSKIILEKGKETRsGSLd------k 290 Candidatus Nitr...
WP_042683926 236 ------------------livkTEKGFDVYPIKISAAqgqEYTETPTFMEGLDKVFSEMLLDSGKISQnSELd------k 291 Candidatus Nitr...
WP_048197205 236 ------------------ailkTEKGLDVYPVKPDGAqdtEN--VPTFMEGLDRVLSKTLLEQGKKAQsTEId------k 289 Candidatus Nitr...
WP_020445405 326 EIEKQERIIAQQQEAIAGFEQEAQSLRAAAEALYAQYDLVDELLSTVRAAREEghdwdaveerldegaergieaAEIVAS 405 Salinarchaeum s...
WP_048099995 243 KRGKIEKTIENIEKTIDEYNKKAEELRKIGKILMENYVYVENVLKSG--------------------------------- 289 Candidatus Acid...
WP_010922912 273 EKQKIIATIKQIEDSIKDYEDKENNYRQLGNFILSKAYEIDQLLLNNR-------------------------------- 320 Saccharolobus s...
WP_069282531 274 KKSKILNSIEQLKKSISEYEQKEAMFKRIGELLLHRSYEIEQMIPKN--------------------------------- 320 Sulfolobus sp. A20
WP_011752412 284 AIRRAVEELSRKAELLSRHSATVDEVLAAYRGLVASRLQWSLVEARLKEAYP------------------------IVKS 339 Thermofilum pen...
WP_020962671 284 VLEKTLEDYLRKVKLLEENISQIEQIIYDYRALVEDKKPWSLIESTLREKYQ------------------------SIKK 339 Thermofilum ado...
WP_052884365 284 RAREALARLELEARLVMDHASRLQRLIESYRRMRESRIPWEQLENDLRKDFP------------------------EVKA 339 Thermofilum uzo...
WP_048186720 291 KIADLQSRIDEQGKAIISVKEKSEKISNVAKILFTFSSQGITSLTDPAATEIL---------------------RTQSAE 349 Candidatus Nitr...
WP_042683926 292 KISELQNKIDEQDKAILLVKERSESITKIAKSLYEFPSKGITSITDPSAMERL---------------------REQNAE 350 Candidatus Nitr...
WP_048197205 290 KISELQSVIDEQDRAVQQVKEKSESIAKVAKALFALSSQGVISIADPRSIETL---------------------KSQNAE 348 Candidatus Nitr...
WP_020445405 406 VDPQNARIRVELETgegddaethtawIEAEEGVEHNADRLYTEAKAVEEKKEGAESAIEDTRERLAEIEQRREEWEARDE 485 Salinarchaeum s...
WP_048099995 290 ------NRKMNISDiv--------ieLNPRLSAIGNSSMYFDMAKEYAQKAKRAEEKLNEMKQKLVKIDQEMTQTKGGTS 355 Candidatus Acid...
WP_010922912 321 --AKSKKVKLNVDGve--------ieLDTSLSATKNAMRFFDEAKEYKRKIERALKSLEELKEKLAKIEKQEIEKQNEIK 390 Saccharolobus s...
WP_069282531 321 --EKKRNIKINVDNie--------ieVDPTISVAKNASKYFEMMKEYRRKVERAIETLKELEERLKILENEEIERKKELK 390 Sulfolobus sp. A20
WP_011752412 340 VDPARSRLVLELEGve--------veVDASRSALSNAASYFEKAKSAKRKLAEASAA-----VERS-AEPAPARPAKPA- 404 Thermofilum pen...
WP_020962671 340 VDPSSPLIVVELEGie--------ieIDPSKNAYANIELHYDKIKSIRKRLSEAKTK-----EEQAKPKQVKQKIAASG- 405 Thermofilum ado...
WP_052884365 340 FNHEKWIIQVDLGGld--------ihVNARISAYANAEMLFEKAKSLKSKIQELQEV-----RHDQPTKVVVRIAKETGR 406 Thermofilum uzo...
WP_048186720 350 LVKERGVPFLKINDek--------iqIKPESSFPAIASTLYNEAKKQSSAIESIEALKRKNQKEIDKLKSQAQENKKAVF 421 Candidatus Nitr...
WP_042683926 351 LVREKGLVFIKIGDek--------vqIKSDSSIPAIASTLFDEAKRQSSATDSIEFLKRKNLKEIQRLRTQIDIAKEYVT 422 Candidatus Nitr...
WP_048197205 349 IIKEKGITYVKINSek--------vqIKENSSIPAIASLLYDESKKQASAIQYILNLREKNQIAIEKLRKQSVTAKDSIS 420 Candidatus Nitr...
WP_020445405 486 qedgaeagdgsggaedgdedggrsdqewldlpsiPIRSRDWWYDRFRWFRTSQGFLVIGGRDADQNEELVQKYLEPGDRF 565 Salinarchaeum s...
WP_048099995 356 ----------------------------------LTIRKKEWYEKYRWSITRNNYVVIAGRDVDQNESLVRKILQDNDIY 401 Candidatus Acid...
WP_010922912 391 ----------------------------------LTLRKKEWYEKYRWSISRSGYLIILGRDASQNESIVKKYLRDKDIF 436 Saccharolobus s...
WP_069282531 391 ----------------------------------ISLRKKEWYEKYRWTITRNGLLVIGGKDASQNESIVKKYMKEKDIF 436 Sulfolobus sp. A20
WP_011752412 405 ----------------------------------------AWYAQFRFFFTSNGFLVVAGRSAGQNELLVRRYMEPGDIF 444 Thermofilum pen...
WP_020962671 406 ----------------------------------------PWYTQFRYFWTTNGFLVVAGKSAGQNQLLVRRYLEDKDIF 445 Thermofilum ado...
WP_052884365 407 ----------------------------------------PWYRDFRFFVTTNGFLVIAGKSAGQNELLVRRYMDEHDLF 446 Thermofilum uzo...
WP_048186720 422 f---------------------------------tEFKKKEWFERYRWFFTSDGLLAIGGRDSSSNSAIIRKQLGKNDKV 468 Candidatus Nitr...
WP_042683926 423 y---------------------------------tQVQKKNWYERYRWFYTSDGLLAIGGRDSSSNSAIIRKHLEKNDKV 469 Candidatus Nitr...
WP_048197205 421 y---------------------------------tQMQKKSWFERYRWFFTSDDLLAIGGRDSSSNSAIIRKHLAKSDKV 467 Candidatus Nitr...
WP_020445405 566 LHAQAHGGPVTILKAADPSesgrdveIPEAAEREAARFAVTYSSVWKEGKFSGDVYAVDHDQVSKTPESGEYLEKGGFAI 645 Salinarchaeum s...
WP_048099995 402 MHADIQGAATTIIKDPKg--------ITEEDLNDAAKIAASYSKAWKSGLGAVDVFWVYGSQVSKSPPTGEYLPKGSFMI 473 Candidatus Acid...
WP_010922912 437 LHADIIGAPATIIITQD-Nk-----tISEEDIYDAAVMAASYSKAWKVGLASVDIFWVLGNQVSKSPPSGEYLNKGSFMI 510 Saccharolobus s...
WP_069282531 437 LHADIVGAPATIIKVLDESk-----qVSDEDLYDAAIIAACYSKAWKVGLGAVDVFWVFGNQVSLTPPTGEYLSKGSFMI 511 Sulfolobus sp. A20
WP_011752412 445 LHADIHGAAAVVLKTGGKq-------PGEADIAEAAQFAACFSSAWKGGLYAVDVFWVPAEQVSKKPPSGEYLAKGSFMV 517 Thermofilum pen...
WP_020962671 446 LHADIHGAAAVVVKTGGKd-------VPEKDILEAAQFAACYSSAWRGGLYTIDVYWVPASQVSLKAPSGEYLAKGSFMI 518 Thermofilum ado...
WP_052884365 447 LHADIHGAPAVVIKTEGKd-------VPEQDILEAAQFAASYSSAWKAGLLTMDVYWVPGSQVSKKAPSGEYLGKGAFMI 519 Thermofilum uzo...
WP_048186720 469 FHAEIFGSPFFVVKDIPESlp-------fDSLNEVAQATVCFSRAWREAMHGMSAYWINPDQVRKGAPSGQFLSRGSFVL 541 Candidatus Nitr...
WP_042683926 470 FHAEIFGSPFFILKDTPDPip-------fDSLNEVAHATVCFSRAWREAMYGMSAYWINPDQVKKAAPSGQFLTRGSFVL 542 Candidatus Nitr...
WP_048197205 468 FHAEVFGSPFFILKDVPEQip-------fDSLNEVAHATVCFSRAWREAMYGMSAYWINPEQVKKAAPSGQFLAKGSFVL 540 Candidatus Nitr...
WP_020445405 646 RGDRTYYDDVEVACTVGIQCE-PE-TRVIGGPPEAIEDQAVTTVAVEPGKfAQGDVGKRIYRQFRERFSdtsfVRKVASP 723 Salinarchaeum s...
WP_048099995 474 YGKKNFIRNVKLDLAIGLEV--SDnIRVIVGSEESIKEKSASYAVIAPGE-EFERTADRLGRILSQAYe---lGTINQLR 547 Candidatus Acid...
WP_010922912 511 YGKKNFIKNVKLQLAIGLILSeNG-VSVIVGSEETISAKTKYYVVIAPGDdDKERITQKIIKVFSRALPe--iNGLNALK 587 Saccharolobus s...
WP_069282531 512 YGKKNFINKVRLELALGIILNnSDqISVIVGSEEAVKTRTNYYVIVSPGDdEKDKISEKIIKIFQRLLPn--tKGLYALK 589 Sulfolobus sp. A20
WP_011752412 518 YGKKNYVRGVKLELLVGLCp-----GGELCVLPALANPRGGCFLKVTPGVyRKDLAARKIAEFVRRECG------AKVGE 586 Thermofilum pen...
WP_020962671 519 YGKKNYVRGVKLELLIGVSe-----KGELLALPAERNPSDGCFLKITPGPyRKDLATRKIIEFLKRECN------FKARE 587 Thermofilum ado...
WP_052884365 520 YGKRNWLRGIKLELLIGVGs-----NG-LEAIPALKKPQGNCYVKLSPGTiSRELTARKIHEFLQHSCG------YKVML 587 Thermofilum uzo...
WP_048186720 542 EGHRNFIKANNLRLAVGILYHdER-YLIMCGPPEPVKKICICYAVIEPGGsDITDTAKRLRVEFIKLQEd---IAKQFDI 617 Candidatus Nitr...
WP_042683926 543 EGQKNFVKISTLKLAVGILKEdNY-HMITCGPLEPIKKRCICYAVIEPGGaEMADTAKKIRSDFVRVQEa---IVARFTI 618 Candidatus Nitr...
WP_048197205 541 EGQKNFVKISDLVLAIGIMKKdNR-HMITCGPPEPIKKNCICFAIIKPGGsDMPDVAKKLRSDFIKLEEd---IAKNFTV 616 Candidatus Nitr...
WP_020445405 724 DLIQHFLPPGTSRIA 738 Salinarchaeum sp. Harcht-Bsk1
WP_048099995 548 DEIIKILPGNSKILK 562 Candidatus Acidianus copahuensis
WP_010922912 588 TEIEDKIPGKSKIVK 602 Saccharolobus solfataricus
WP_069282531 590 EEIMDKLPGKSKIIK 604 Sulfolobus sp. A20
WP_011752412 587 DEVARLLPDGGFHLE 601 Thermofilum pendens
WP_020962671 588 EDVVKLLPDGGFHIE 602 Thermofilum adornatum
WP_052884365 588 EDILRLLPQGTFHVE 602 Thermofilum uzonense
WP_048186720 618 DDFVRALPAGESHIT 632 Candidatus Nitrosotenuis cloacae
WP_042683926 619 DDFVRVLPAGTSHVT 633 Candidatus Nitrosotenuis chungbukensis
WP_048197205 617 DDYVRVLPAGQSHIT 631 Candidatus Nitrosotenuis uzonensis
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