Conserved Protein Domain Family
7tmA_5-HT4

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cd15056: 7tmA_5-HT4 
serotonin receptor subtype 4, member of the class A family of seven-transmembrane G protein-coupled receptors
The 5-HT4 subtype is a member of the serotonin receptor family that belongs to the class A G protein-coupled receptors, and binds the neurotransmitter serotonin (5HT; 5-hydroxytryptamine) in the mammalian central nervous system (CNS). 5-HT4 receptors are selectively linked to G proteins of the G(s) family, which positively stimulate adenylate cyclase, causing cAMP formation and activation of protein kinase A. 5-HT4 receptor-specific agonists have been shown to enhance learning and memory in animal studies. Moreover, hippocampal 5-HT4 receptor expression has been reported to be inversely correlated with memory performance in humans. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.
Statistics
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PSSM-Id: 320184
Aligned: 9 rows
Threshold Bit Score: 406.105
Created: 13-Nov-2008
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     #  
Q13639        20 VVLLTFLSTVILMAILGNLLVMVAVCWDRQLRkikTNYFIVSLAFADLLVSVLVMPFGAIELVqd-iWIYGevFCLVRTS 98  human
EEN64960      11 VLLSSFLALVILLTIVGNILVISTVALFRSLRs-lTNYFVVSLAVADLLVGVIVMTLGTQYEVsg-rWRHGeiFCLIFTS 88  Florida lancelet
EOB08855      12 IVLLTFISAVILMAILGNLLVMVAVCRDRQLRkikTNYFIVSLAFADLLVSVLVMPFGAIELVqd-nWIYGemFCLVRTS 90  mallard
CAG04907      10 TVLSFFLSVIIVMTVFGNLLVMVALCKDRHLRrkkTNYFIVSLAFADLLVAVVVMPFAAIELTtg-hWRYGeiFCLVRTS 88  spotted green p...
EKC36941      57 VLIGLVLSLFPVLTLIGNVLVIVAVFTHKRLRt-iTNVFVVSLSVADALVAILVMPFAVYLQInnnqWDLGptICTIYTC 135 Pacific oyster
AEA76357      64 ITISAILICVPILTVVGNWVVILAVITHRKLRt-iTNAFVVSLAVADMSVALFVMPFSIYQQLnnklWALGdtLCKLSSS 142 California sea ...
XP_004944882  20 IVLLTFISAVILMAILGNLLVMVAVCRDRQLRkikTNYFIVSLAFADLLVSVLVMPFGAIELVqd-nWIYGemFCLVRTS 98  chicken
NP_000861     20 VVLLTFLSTVILMAILGNLLVMVAVCWDRQLRkikTNYFIVSLAFADLLVSVLVMPFGAIELVqd-iWIYGevFCLVRTS 98  human
XP_004073659   5 IALICFLSLVMLMSVLGNLLVMVAVCKDRQLRkikTNYFIVSLAFADLLVSVLVMPFGAIELVhq-hWIYGetFCLVRTS 83  Japanese medaka
Feature 1         ##  ##                                                                         
Q13639        99 LDVLLTTASIFHLCCISLDRYYAICCQplvyrnkmtPLRIALMLGGCWVIPTFISFLPIMQGwnnigiidlie-krkfnq 177 human
EEN64960      89 MDISLTTCSIMHLTPPRGIPHRKMVLM---------IAMCWVVPVIMAYVPIMNRWNTIGIEpvvedtk----------c 149 Florida lancelet
EOB08855      91 LDVLLTTASILHLCCISLDRYYAICCQplvyrnkmtPLRIAVMLGGCWVIPTFISFLPIMQGwnsigiidliq-qrqfnk 169 mallard
CAG04907      89 LDVQLTTASILHLCCIALDRYYAICCQplvyrhkmtPVRVAAMLSGCWLIPTFISFLPIMQSwntigiedliknrqasgg 168 spotted green p...
EKC36941     136 FDVMSTTSSIMHLSCLAVDRYLAICRPflhe--rlnNKIVATMVASCWVLPAIIAYIPILKKwnhigied-------yiy 206 Pacific oyster
AEA76357     143 LDVMMCTVSIFHLSCLAVDRYLAICRPflhe--rltVRWVAIMLVFCWATPVFISFLPILNGwnhlgieqlv----acaf 216 California sea ...
XP_004944882  99 LDVLLTTASILHLCCISLDRYYAICCQplvyrnkmtPLRIAVMLGGCWVIPTFISFLPIMQGwnsigiidliq-qrqfnk 177 chicken
NP_000861     99 LDVLLTTASIFHLCCISLDRYYAICCQplvyrnkmtPLRIALMLGGCWVIPTFISFLPIMQGwnnigiidlie-krkfnq 177 human
XP_004073659  84 LDVLLTTASILHLCCIALDRYYAICCQplvyrnkmtPMRVALMMGGCWVIPTFISFLPIMQGwnsigidhvie-errhsg 162 Japanese medaka
Feature 1                #      #  ##  #                                                         
Q13639       178 nsnstYCVFmVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAkehahqiqmlqragas---------------------- 235 human
EEN64960     150 algpeSCVFlVNKEFSLIASTLSFYLPAVMMTLAYYQVYRAArrqmqqiisl---------------------------- 201 Florida lancelet
EOB08855     170 asnstYCIFmVNKPYAITCSVVAFYIPFLLMVLAYYRIYITArehahqirvlqragtp---------------------- 227 mallard
CAG04907     169 gsndtSCVFmVNTPYALICSTVAFYVPLALMVLAYQRIYVTAmahvrqietlqragsapvpgttptitvksstssdpleh 248 spotted green p...
EKC36941     207 clgdsVCALiVNIPFAIICSTIAFYIPAVFMIISNVKIYLAArtqarhirslea-------------------------- 260 Pacific oyster
AEA76357     217 ppgapVCAFiVNTAFAVICSLIAFYIPVLFMGVCNVKIYMAAvqqahqirtlekag------------------------ 272 California sea ...
XP_004944882 178 asnstYCIFmVNKPYAITCSVVAFYFPFLLMVLAYYRIYVTAreharqirvlqragtp---------------------- 235 chicken
NP_000861    178 nsnstYCVFmVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAkehahqiqmlqragas---------------------- 235 human
XP_004073659 163 gsnttSCVFmVNKPYALTCSLVAFYIPLVLMVLAYQRIYVTArahalqismlqraggagap------------------- 223 Japanese medaka
Feature 1                                                 #  ##  #                 #   #   #     
Q13639       236 -----sesrpqsadqhsthrmRTETKAAKTLCIIMGCFCLCWAPFFVTNIVDPfid---ytvPGQVWTAFLWLGYINSGL 307 human
EEN64960     202 -----------ersmnnnenmRREKKAAKTLGIIMGCFLVCWMPFFVANIVEPlcgycitrsCDLCLKFFLWLGYINSTL 270 Florida lancelet
EOB08855     228 -----adgrqhppdqhsthrmKTETKAAKTLCIIMGCFCLCWAPFFVTNIVDPfin---ytvPGKLWTAFLWLGYINSGL 299 mallard
CAG04907     249 yslrtaasssteqapmansrmRIETKAAKTLAVIMGCFCLCWAPFFITNVVDPfih---ysvPWQLWTTWLWLGYINSGL 325 spotted green p...
EKC36941     261 ----------svhckrrnskfKHETKAAKTIGIIMGCFCVCWFPFFIMNIIDPiig---hkiEYLPWTIALWLGYLNSML 327 Pacific oyster
AEA76357     273 -------nhnhyshckrkskfKQESKAAKTLGIIMGCFSVCWFPFFITNVIDPlin---yriPYNPWQIALWLGYINSMM 342 California sea ...
XP_004944882 236 ------adsrhqpdqhsthrmKTETKAAKTLCIIMGCFCLCWAPFFVTNIVDPfin---ytvPGKLWTAFLWLGYINSGL 306 chicken
NP_000861    236 -----sesrpqsadqhsthrmRTETKAAKTLCIIMGCFCLCWAPFFVTNIVDPfid---ytvPGQVWTAFLWLGYINSGL 307 human
XP_004073659 224 ---gtsgvsadsadhqrnhrmRTETKAAKTLCIIMGCFCLCWAPFFVTNVVDPfid---yrvPDQLWTACLWLGYINSML 297 Japanese medaka
Feature 1                        
Q13639       308 NPFLYAFLNksFRRAF 323 human
EEN64960     271 NPMIYAFFNrsFRRAF 286 Florida lancelet
EOB08855     300 NPFLYAFLNksFRRAF 315 mallard
CAG04907     326 NPFLYAFLNraFRRAF 341 spotted green pufferfish
EKC36941     328 NPFLYYNFNksFKTAF 343 Pacific oyster
AEA76357     343 NPLLYYYFNrnFYHAF 358 California sea hare
XP_004944882 307 NPFLYAFLNksFRRAF 322 chicken
NP_000861    308 NPFLYAFLNksFRRAF 323 human
XP_004073659 298 NPILYAFLNksFRRAF 313 Japanese medaka

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