Conserved Protein Domain Family
LIM1_SF3

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cd09440: LIM1_SF3 
The first Lim domain of pollen specific protein SF3
The first Lim domain of pollen specific protein SF3: SF3 is a Lim protein that is found exclusively in mature plant pollen grains. It contains two LIM domains. The exact function of SF3 is unknown. It may be a transcription factor required for the expression of late pollen genes. It is possible that SF3 protein is involved in controlling pollen-specific processes such as male gamete maturation, pollen tube formation, or even fertilization. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188824
Aligned: 17 rows
Threshold Bit Score: 119.107
Created: 21-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #                 #  #  #  #                 #  #       
AAD32870       6 TTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFKR 68  thale cress
P29675         7 TTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKR 69  common sunflower
XP_001765937   6 TTQKCKACEKTVYLVEQLTADGVVYHKSCFRCNHCKGTLKLANYASLEGVLYCKPHFEQLLKV 68  Physcomitrella patens subsp. patens
ACA33852       6 TTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKR 68  loblolly pine
NP_001049655   5 TQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLFKE 67  Japanese rice
ACU18916       6 TQQKCKACDKTVHLVEGLSVDGAAYHKNCFRCSHCNGLLAISNYSSTEGVLYCKVHFEQLFKE 68  soybean
XP_002969252   6 RQQKCKSCEKTVYLVDQLSADGVLYHKACFRCQHCKGTLKLSNYASLEGVLYCKPHLEQLFRK 68  Selaginella moellendorffii
NP_001154680   6 TQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKE 68  thale cress
XP_002509768   6 TTEKCKACDKTVHFIEMITADGISYHKTCFKCSHCDGRLVMSSYSSMEGVLYCKPHFEQLFRE 68  castor bean
CBI34710       6 TTQKCKACDKTVHIIDTISADGIAYHKTCFRCSHCNGPLVMSNYSSMDGVLYCKPHFEQLFRE 68  wine grape

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