Conserved Protein Domain Family
SRPBCC_2

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cd07819: SRPBCC_2 
Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Statistics
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PSSM-Id: 176861
Aligned: 38 rows
Threshold Bit Score: 127.74
Created: 11-Jul-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative hydrophobic ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # # #        ### ##           #     # # # #   # #             # #            
YP_912570      6 NIMVEREFYTSCSPQKVFLLLADVPRSASHFPKVDQLVDLGGNAYRWEMEKIGIGSYTLQQtIYACRYNAdedalKVFWT 85  Chlorobium phae...
YP_001129905   6 EINVEKEFATSASLGEVYALLADVPRSASHFPKVERFVDLGGNAYRWEMEKIGIGGHTLHEtIYACLYTAdpnghTISWT 85  Prosthecochlori...
YP_374245      6 EITVQREFRTASSPEDVFRLLADVPRSASYFPQVLQLVDLGDNAYRWEMEKIGVGDYTLQQtIYASRYTSdpatlSVSWT 85  Pelodictyon lut...
YP_001997968   6 TLDVSKSFETSAQPDKVFELLADVPRSASYFPDVEKLEPLGDNSYRWIMERIALGDHTLQQtIYACTYRSdpatlSVDWT 85  Chlorobaculum p...
YP_002015555   6 TMTIRRSLKTGASGTAVFRLLSDIARSASFFPKIETISDLGSNTWRFETERIGIGSYTILQlSVISRYQFdkeqgIISWA 85  Prosthecochlori...
YP_432633      6 TIEISRTFETSASYDRVFDLLADVPASVSHFPKVEQLVDLGDNAYRWEMKKIGVDKHAIQT-VYACQYSAdkergSITWA 84  Hahella chejuen...
YP_524017      6 NVDLGYEFEVKAGIKEVFDVLSDIPVAASHYPKVDKLVDLGKDTFRWEFEKIGIAQFHLQT-IFACKYASnrakgTINWT 84  Rhodoferax ferr...
ZP_01897559    6 KIQLNKKFTVPADINTVYNLLADVPASASHFPDLINLIEEAANTYRWEMKKIGLGPIQLQT-IYACEYTCdaenkSIVWE 84  Moritella sp. PE36
YP_002434269   6 SLELNETIDLPCDFDKAFDFFMDVNATGKCFTKVEEIKDLGDDKYHYIMAKEGVGKYSVQV-EYAAKYSFdrdkgVVEWT 84  Desulfatibacill...
ZP_01915772    6 NVKIEKSFKVACSAKKAFDQLADVADTVALFPKLDKIVDLGDAVWRWEMAKIGAAGISHQV-KYAVKYTNdg-ksKIDWN 83  Limnobacter sp....
Feature 1                      ## # #      # # # #     #####     ###  ###  #    
YP_912570     86 SLPGv-gNAIVNGEWNLTPKDG-GTRINLKTSGDLTVDFPSFLQFILSPLVVMEFTGMIDRYI 146 Chlorobium phaeobacteroides DSM 266
YP_001129905  86 PVAGv-gNGLVEGGWTMTRKGE-ETLVTLHTKGILTVDLPSFLQLLLSPLVVMEFNLMIAEYL 146 Prosthecochloris vibrioformis DS...
YP_374245     86 PVEGv-gNALVEGHWTLASTGG-GTAVALYSKGLLTVELPGFLQFLLSPLVTMEFEGLIDRYI 146 Pelodictyon luteolum DSM 273
YP_001997968  86 PVDGe-gNARVEGSWRIEPAGT-GTKVQLHTKGTLEVDLPGFLQFLLSPLIELAFVQKIERYI 146 Chlorobaculum parvum NCIB 8327
YP_002015555  86 PAGAa-eHLKVEGHWEILQHPD-GCHILLTAQGTHEINLPEFMKNLLAPLIRLEAEILVNCFL 146 Prosthecochloris aestuarii DSM 271
YP_432633     85 PVKGe-gNSEVQGSWSVVDKGG-RVEVRFQTKGSLTLPLPSLLKLAISPVVKHEFNSLVDVYM 145 Hahella chejuensis KCTC 2396
YP_524017     85 PVKGe-gNGLIEGGWKLTDKKK-STKIVLSLTGELTLPVPGLLKMVITPLVKSEFEKMTDQWV 145 Rhodoferax ferrireducens T118
ZP_01897559   85 PRDTadnSAKVSGKWILTETST-GCDINLLTDAVITIPLPSLAGIGLKPVVKVEFETLTNTYI 146 Moritella sp. PE36
YP_002434269  85 PVKGi-gNGVCSGKSVITESGG-KVKVDFSTTMNLELPLPGLAKPIIKPFVNREFEKSMEQFR 145 Desulfatibacillum alkenivorans A...
ZP_01915772   84 PVPGe-gNATVSGGWVIKEDSPkACTISFRSTGEFEMPVPRLMKGIAEGIVKSEFDAQVGTFL 145 Limnobacter sp. MED105

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