Conserved Protein Domain Family
AAK_AKii-LysC-BS

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cd04261: AAK_AKii-LysC-BS 
AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides.
Statistics
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PSSM-Id: 239794
Aligned: 36 rows
Threshold Bit Score: 295.594
Created: 3-Oct-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative catalytic residues [active site]
Evidence:
  • Comment:Based on similarity to mutational studies of Thermus thermophilus AK.
  • Comment:Assumed to have direct contribution to the catalysis.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                       #                             #     
AAA87318      3 LIVQKFGGTSVGsveKIQNAANRAIaekQKGHQVVVVVSAMGKSTDELVSLAKais---dqPSKREMDMLLATGEQVTIS 79  Bacillus subtilis
P61489        3 LVVQKYGGTSVGdleRIHKVAQRIAhyrEKGHRLAVVVSAMGHTTDELIALAKrvn---prPPFRELDLLTTTGEQVSVA 79  Thermus thermoph...
BAB75343      3 LIVQKFGGSSVGsveRIQAVAQRVYktvKAGNSLVVVVSAMGKTTDGLVKLANeis---rnPNRREMDMLLSTGEQVTIA 79  Nostoc sp. PCC 7120
YP_002825     4 IIVQKYGGTSVGtpeRIQNVAKRIKsyhDKGQQVAVIVSAMGHTTDELVDLAAkis---snPPKREMDMLLSTGEQISTA 80  Leptospira inter...
6225021       3 ILVQKFGGTSVGtleRIELCAKRVIkalEKGYKPVVVSSAMAGETDSLIELAKkvh---prPPEREMDTLLAVGEQKAIA 79  Aquifex aeolicus
6225023       2 LIVQKYGGTSMGsieRIHNVAQRVLesvTLGHQVVVVVSAMSGETDRLLEFGKnfs---hnPNKREMDRIVSVGELVSSA 78  Helicobacter pylori
6225024       3 LIIQKFGGTSVAnveRIKKLVPIIKaeiAKNNQVIVVVSAMAGVTNQLVTLCNevsslnkrSQFAEYDVALSSGEIVTAS 82  Rickettsia prowa...
ZP_00953207   5 RLVLKFGGTSMAnpeRIAHSASIVAaeaRAGKQVAVVVSAMAGETDRLLGAAEalg---ggLGETETDTVLAAGEQASAA 81  Oceanicaulis ale...
YP_265941     3 TVVLKFGGTSVGsidRIKSVAKIISsykKKKMGVIVVSSAMSGTTNELIKKTKels---ntFDAAEYDVLLATGEQATCA 79  Candidatus Pelag...
ZP_01257617   3 IVVLKFGGTSVGtieKIKNVAKIISnfkKKKYKVIVVSSAMSGVTNELINKSKkis---knFSTAEYDALVSSGEQVACS 79  Psychroflexus to...
Feature 1                                                                                       
AAA87318     80 LLSMALQEkGYDAVSYTGWQAGIRTEAIHgNARITDIDt-SVLADQLEkGKIVIVAGFQGMt--eDCEITTLGRGGSDTT 156 Bacillus subtilis
P61489       80 LLSMQLWAmGIPAKGFVQHQIGITTDGRYgDARILEVNp-ARIREALDqGFVAVIAGFMGTt--pEGEITTLGRGGSDTT 156 Thermus thermoph...
BAB75343     80 LLSMALQElGQPAISMTGAQVGIVTEAEHtRARILHIEt-ERVEGHIKeGKVVVVAGFQGIssngSLEITTLGRGGSDTS 158 Nostoc sp. PCC 7120
YP_002825    81 LLAMALWEiGVPATSFTGSQIKLLTDGNFsNAKIKMIDr-SRIDSALNeGKVVIIAGFQGId--aEENITTLGRGGSDTS 157 Leptospira inter...
6225021      80 LFAMTLNKlGYPAVSLCGWQVPIITDNVHtKARIRKIGi-SRLLSLIEeGYIPVVAGFQGVt--eDWEITTLGRGGSDTT 156 Aquifex aeolicus
6225023      79 ALSMALERyGHRAISLSGKEAGILTSSHFqNAVIQSIDt-KRITELLEkNYIVVIAGFQGAd--iQGETTTLGRGGSDLS 155 Helicobacter pylori
6225024      83 LLALALQEeEIKAQSLLAWQLPIRTNNNY-SKALVEFIttDLLEKYLQlKIIPIIAGFQGIn--kSNRVTTLGRGGSDTT 159 Rickettsia prowa...
ZP_00953207  82 LMALALKReGFQSQAVMGWSLPILVEGPPgGAKITDIHg-EQLDAMLSaGVIPVVAGYQGLn--aEGRLATLGRGGTDLS 158 Oceanicaulis ale...
YP_265941    80 LIAGRLKHlGFKARSWMSWQLPIITEGPYsSSRISKINk-GKILSFMKsGGIPIITGFQGIn--lENRLTTLGRGGTDAS 156 Candidatus Pelag...
ZP_01257617  80 LIAGRLVHmGFKSRSWLSWQIPIITKGPHmNSRISQINk-KKIIRYLKeGGTPIIAGFQGVn--nESRITTIGRGGSDAS 156 Psychroflexus to...
Feature 1                                                                                       
AAA87318    157 AVALAAALKVDkCDIYTDVPGVFTTDPRYVKSARKLEGISYDEMLELANLGAGVLHPRAVEFAKNYqVPLEVRSSTETe- 235 Bacillus subtilis
P61489      157 AVAIAAALGAKeCEIYTDTEGVYTTDPHLIPEARKLSVIGYDQMLEMAALGARVLHPRAVYYAKRYgVVLHVRSSFSYn- 235 Thermus thermoph...
BAB75343    159 AVALAAALQADfCEIYTDVPGILTTDPRIVPEAQLMGEITCNEMLELASLGAKVLHPRAVEIARNYgMPLVVKSSWTDd- 237 Nostoc sp. PCC 7120
YP_002825   158 AVAVAAILGAKeCEIYTDVDGVYTADPRVVPSAKKHKQITYEEMLELASLGAGVLHSRSVELGMNYdVVIHVRSSFNDn- 236 Leptospira inter...
6225021     157 AVALAAALKAD-CEINTDVPGVFTADPRIVPNAKKIKKISYEEMLELASLGAKVMQIRSVEFAAKYnVRIHVRSTFSEe- 234 Aquifex aeolicus
6225023     156 AVALAGALKAHlCEIYTDVDGVYTTDPRIEEKAQKIAQISYDEMLELASMGAKVLLNRSVELAKKLsVKLVTRNSFNHs- 234 Helicobacter pylori
6225024     160 AALIAAAMKADrCDIYTDVDGIFTADPRIIPNAKRIKEIDFLEMLELASSGAKVLHPRAVELVMRYkIDMRVLSTFSPnt 239 Rickettsia prowa...
ZP_00953207 159 AAAVAAAVGAE-CDIYTDVDGVFTTDPRIAPEAVRVERISHDAMLELAAMGAKVLQTRSVEYAKAKgVTLRVKSSFLPag 237 Oceanicaulis ale...
YP_265941   157 AIMLAKFFNTDaCDIYTDVDGVYTTDPRNHSKAKKIHKISYDEMLEMASLGAKVMQPTSVQDAKLNnINFSVKSSFQKk- 235 Candidatus Pelag...
ZP_01257617 157 AIMIAKFFKAErCIIYTDVEGVYTTDPNKLKKANKIKVISYEEMLEMASLGAKVMQPVSIQDARLNrIDIEVKSSFIKr- 235 Psychroflexus to...
Feature 1               
AAA87318    236 --aGTLIE 241 Bacillus subtilis
P61489      236 --pGTLVK 241 Thermus thermophilus
BAB75343    238 --pGTWVT 243 Nostoc sp. PCC 7120
YP_002825   237 --iGTLVV 242 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
6225021     235 --eGTWIV 240 Aquifex aeolicus
6225023     235 --eGTLIV 240 Helicobacter pylori
6225024     240 --eGTLIT 245 Rickettsia prowazekii
ZP_00953207 238 qsaGTEVT 245 Oceanicaulis alexandrii HTCC2633
YP_265941   236 --kGTLIT 241 Candidatus Pelagibacter ubique HTCC1062
ZP_01257617 236 --pGTLIT 241 Psychroflexus torquis ATCC 700755

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