Conserved Protein Domain Family
CYP26B1

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cd20637: CYP26B1 
cytochrome P450 family 26, subfamily B, polypeptide 1
Cytochrome P450 26B1 (CYP26B1) is a retinoic acid-metabolizing cytochrome that plays key roles in retinoic acid (RA) metabolism. It is an all-trans-retinoic acid (atRA) hydroxylase that catalyzes the formation of similar metabolites as CYP26A1. RA is a critical signaling molecule that regulates gene transcription and the cell cycle. In rats, CYP26B1 regulates sex-specific timing of meiotic initiation, independent of RA signaling. CYP26B1 belongs to the large cytochrome P450 (P450, CYP) superfamily of heme-containing proteins that catalyze a variety of oxidative reactions of a large number of structurally different endogenous and exogenous compounds in organisms from all major domains of life. CYPs bind their diverse ligands in a buried, hydrophobic active site, which is accessed through a substrate access channel formed by two flexible helices and their connecting loop.
Statistics
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PSSM-Id: 410730
Aligned: 5 rows
Threshold Bit Score: 837.581
Created: 25-Mar-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
heme bindingchemical
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Synechocystis sp. CYP120A1 with bound heme (2VE3)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #            ##      # 
Q9NR63        60 GETGHWLLQgsGFQSSRREKYGNVFKTHLLGrPLIRVTGAENVRKILMGEhhlvSTEWPrSTRMLLGpntVSNSIGDIHR 139 human
NP_001072655  60 GETFHWILQgsDFQSSRREKYGNVFKTHLLGrPLIRVTGAENVRKILMGEhhlvSTEWPrSTRMLLGpnsLANSIGDIHR 139 Xenopus tropicalis
Q6EIG3        60 GETCHWFFQgaGFHASRRQKYGNVFKTHLLGrPLIRVTGAENVRKVLMGEhslvTVDWPqSTSTLLGpnsLANSIGDIHR 139 zebrafish
XP_005997718  60 GETFHWILQgsEFQSSRREKYGNVFKTHLLGrPLIRVTGADNVRKILMGEhtlvSTEWPrSTRMLLGpnsLVNSIGDIHR 139 Latimeria chalu...
XP_007904867  60 GETFHWLIEgsNFHASRREKYGNVFKTHLLGrPLIRVTGSENVHKILMGEhslvTTQWPrSTRMLLGptsLVNSVGDVHR 139 Callorhinchus m...
Feature 1          #      #                                               #                      
Q9NR63       140 NKRKVFSKIFSHEALESYLPKIQLVIQDTLRAWSSHpeainVYQEAQKLTFRMAIRVLLGfsipeeDLGHLFEVYQQFVD 219 human
NP_001072655 140 HKRKVFSKIFSHEALESYLPKIQLVIQDTLRVWSSNpesinVYCEAQKLTFRMAIRVLLGfrlsdeELSQLFQVFQQFVE 219 Xenopus tropicalis
Q6EIG3       140 KRRKIFAKVFSHEALESYLPKIQQVIQETLRVWSSNpdpinVYRESQRLSFNMAVRVLLGfripeeEMHCLFSTFQEFVE 219 zebrafish
XP_005997718 140 NKRKVFSKLFSHEALESYLPKIQVVIQDNLREWSSNpepinVYRESQKLTFRMAIRVLLGfrvseeEMNHLFEAFQQFIE 219 Latimeria chalu...
XP_007904867 140 HKRKVFAKLFSHDALQSYLPKIQQVIRDGIRDWSSSeepivVYQEAKKLTFRIAVRVLLGfqvseeDLSLLSSNFEQLVA 219 Callorhinchus m...
Feature 1                                                                                ##  ##  
Q9NR63       220 NVFslPVDLPFSGYRRGIQARQILQKGLEKAIREKLQctqgkdyLDALDLLIESSKEhgkemTMQELKDGTLELIFAAYA 299 human
NP_001072655 220 NVFslPVDVPFSGYRRGIRAREMLLKSLEKAIQEKLQntqgkdyADALDILIESGKEhgkelTMQELKDGTLELIFAAYA 299 Xenopus tropicalis
Q6EIG3       220 NVFslPIDLPFSGYRKGIRARDSLQKSIEKAIREKPLhtqgkdyTDALDVLLESAKEnntelTMQELKESTIELIFAAFA 299 zebrafish
XP_005997718 220 NIFslPLDLPFSGYRRGICARDSLEKGLEKAIREKIQsnqgkdyADALDILIESSKEnsrelSMQELKDATIELIFAAFA 299 Latimeria chalu...
XP_007904867 220 NLFslPLNLPFSGYRKGMRARDNLYTYLQKAISEKLQggqdkeySDALDILIESAREhgkelSMQELKESTVELIFAAFA 299 Callorhinchus m...
Feature 1        ##                                                            #    ##    #      
Q9NR63       300 TTASASTSLIMQLLKHPTVLEKLRDElrahgilhsggcpcegtlrlDTLSGLRYLDCVIKEVMRLFTPISGGYRTVLQTF 379 human
NP_001072655 300 TTASASTSLIMQLLKHPSVLEKLREElrgnsilhng-cvcegalrvETISSLHYLDCVIKEILRLFSPVSGGYRTVLQTF 378 Xenopus tropicalis
Q6EIG3       300 TTASASTSLVMQLLRHPAVLEKLREElrscgllhdg-clcqgelrlDSIISLKYLDCVIKEVLRLFAPVSGGYRIATQTF 378 zebrafish
XP_005997718 300 TTASASTSLIMQLLKHPVVLEKLHEElrsngilhng-clcegslslEIILSLKYLDCVIKEVLRLFTPVSGGYRTALQTF 378 Latimeria chalu...
XP_007904867 300 TTSSACTSLVLQLLQHPGVLEKLREElghqglvqeg-crcqetlrmDTIARLKYLDCVIKEVLRLLPPVSGGYRSALQTF 378 Callorhinchus m...
Feature 1                      # #                                    ###   # ###  ##   #        
Q9NR63       380 ELDgFQIPKGWSVMYSIRDTHdTAPVFkDVNVFDPDRFsqarsedkdGRFHYLPFGGGVRTCLGKHLAKLFLKVLAVELA 459 human
NP_001072655 379 ELDgFQIPKGWSVLYSIRDTHdTAPVFkDVDVFDPDRFgqdrtedkdGRFHYLPFGGGVRNCLGKHLAKLFLKVLAIELA 458 Xenopus tropicalis
Q6EIG3       379 ELDgVQVPKGWSVMYSIRDTHdTSAVFkDVEAFDPDRFspersedreGRFHYLPFGGGVRSCLGKQLATLFLKLLAVELA 458 zebrafish
XP_005997718 379 ELEgFQIPKGWSVLYSIRDTHdTAPVFkDGDTFDPDRFgqdrsedkdGRFHYLPFGGGVRTCLGKQLAKLFLKTLAIELA 458 Latimeria chalu...
XP_007904867 379 ELDgCQIPKGWSVLYSIRDTHdTAQVFqNVAAFDPDRFgeerdenkgGRFNYIPFGGGVRGCLGKELAKLVLKVLGVELA 458 Callorhinchus m...
Feature 1                                       
Q9NR63       460 STSRFeLATRTFPRItlvPVLHPVDGLSVKF 490 human
NP_001072655 459 SMSRFeLATRTFPKImpvPVVHPADELKVRF 489 Xenopus tropicalis
Q6EIG3       459 GGSRFeLSTRTFPRMisvPVVHPTDGLRVKF 489 zebrafish
XP_005997718 459 STSSFeLATRTFPRVttvPVVHPIDGLKVKF 489 Latimeria chalumnae
XP_007904867 459 ISSRFqLATRSPPRMqtvPVVHPVDGLRVRF 489 Callorhinchus milii

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