1A35


Conserved Protein Domain Family
TOPEUc

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smart00435: TOPEUc 
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DNA Topoisomerase I (eukaryota)
DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Statistics
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PSSM-Id: 214661
Aligned: 24 rows
Threshold Bit Score: 515.361
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1A35_A        186 LFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS---PPPGHKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIK 262  human
AAC18301      287 LFRGRGDHPKTGKLKTRVVPEQVIINIGKDSVIPS---PPPGHNWKEVRHDNTVTWLATWNENVNNNVKYVFLSAGSSLK 363  Pneumocystis ...
CAA29559      337 LFRGRGSHPKTGSLKRRVYPEQITINIGEGVPVPE---PLPGHQWAEVKHDNTVTWLATWHENINNNVKYVFLAAGSSLK 413  fission yeast
EEU08906      268 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPP---APEGHKWGEIRHDNTVQWLAMWRENIFNSFKYVRLAANSSLK 344  Saccharomyces...
AAO19447      393 LFRGRGEHPKTGRVKARVQPEQITINIGKEARVPP---PPEGHKWKEVKHDQEGTWLAMWQENINGNYKYVMLAANSDVK 469  Emericella ni...
AAC39319      393 LFRGRGEHPKTGRVKARVQPEQITINIGKEARVPP---PPEGHKWKEVKHDQEGTWLAMWQENINGNYKYVMLAANSDVK 469  Emericella ni...
AAB39507      304 LFRGRGAHPKTGKLKRRVVSEQVTLNLGKDAKIPE---PPAGHQWGEIRHDNEVTWLAMWKENISDSLKYVRFANNSSVK 380  Candida albicans
Q00313        302 LFRGRGAHPKTGKLKRRVVSEQVTLNLGKDAKIPE---PPAGHQWGEIRHDNEVTWLAMWKENISDSLKYVRFANNSSVK 378  Candida albicans
AAC14193      553 LFLGRGAHPKTGLVKKRIEAEDITINIGKGVPVPE---PPPGHKWCKVVHDDKVAWLAMWKENINNGFKYVWLHASSAVK 629  Physarum poly...
XP_001351663  308 LFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRlydNMCGHNWGDIYHDNKVTWLAYYKDSINDQIKYTFLSAQSKFK 387  Plasmodium fa...
1A35_A        263 GEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEgETADTVGCCSLRVEHINLHP 342  human
AAC18301      364 GQSDLKKYEKARELKLYIDNIRKQYRKELEDKLMEVRQRATAMYLIDLFALRAGNEKGE-DEADTVGCCSLRYEHISLSP 442  Pneumocystis ...
CAA29559      414 GQSDLKKYEKSRKLKDYIDDIRKGYRKDLKNELTVERQRGTAMYLIDVFALRAGNEKGE-DEADTVGCCSLRYEHVTLKP 492  fission yeast
EEU08906      345 GQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSE-DEADTVGCCSLRYEHVTLKP 423  Saccharomyces...
AAO19447      470 GQSDYKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGE-DEAETVGCCSLKYENVTLKP 548  Emericella ni...
AAC39319      470 GQSDYKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGE-DEAETVGCCSLKYENVTLKP 548  Emericella ni...
AAB39507      381 GQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGE-DEADTVGCCSLRYEHVTLKP 459  Candida albicans
Q00313        379 GQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGE-DEADTVGCCSLRYEHVTLKP 457  Candida albicans
AAC14193      630 GRSDMKKFEVARKLKDHIEKIRKKYLKELGSEELEERQRATAIYLIDRLALRVGNEKDE-DTADTVGCCSLRVEHVTLKE 708  Physarum poly...
XP_001351663  388 GYKDLMKYENARKLKSCVHKIREDYKNKMKNKNIIDKQLGTAVYLIDFLALRVGGEKDIdEEADTVGCCSLRVEHISFAH 467  Plasmodium fa...
1A35_A        343 ELDGQeyv-----------------------------veFDFLGKDSIRYYNKVPVEKRVFKNLQLFME-------N-KQ 385  human
AAC18301      443 PNTVV----------------------------------FDFLGKDSIRYYNEVQVDPQVFKNLKIFKRs------P-KT 481  Pneumocystis ...
CAA29559      493 PRTVV----------------------------------FDFLGKDSIRYYNEVEVDPQVFKNLKIFKR-------PpKK 531  fission yeast
EEU08906      424 PNTVI----------------------------------FDFLGKDSIRFYQEVEVDKQVFKNLTIFKRp------P-KQ 462  Saccharomyces...
AAO19447      549 PNKVI----------------------------------FDFLGKDSIRFYDEVEVDPQVFKNLKIFKKp------P-KK 587  Emericella ni...
AAC39319      549 PNKVI----------------------------------FDFLGKDSIRFYDEVEVDPQVFKNLKIFKKp------P-KK 587  Emericella ni...
AAB39507      460 PNKVI----------------------------------FDFLGKDSIRFYQEVEVDKQVFKNLRIFKKs------P-KQ 498  Candida albicans
Q00313        458 PNKVI----------------------------------FDLLGKDSIRFYQEVEVDKQVFKNLRIFKKs------P-KQ 496  Candida albicans
AAC14193      709 PASVT----------------------------------LDFLGKDSMRYHNTVDVDPRVFKNLSEFMYkggnkkaP-KK 753  Physarum poly...
XP_001351663  468 DIPFKsvdskeqktndekvnkiplptnlesissedcyitLDFLGKDSIRYFNTVKIDKQAYINIIIFCK-------N-KN 539  Plasmodium fa...
1A35_A        386 PEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTa-------------------------------- 433  human
AAC18301      482 EGDMLFDRLNTSKLNNHLTSLMPGLSAKVFRTHNASYTMSEQLKNTP--------------------------------- 528  Pneumocystis ...
CAA29559      532 EGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEELKKMP--------------------------------- 578  fission yeast
EEU08906      463 PGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPn-------------------------------- 510  Saccharomyces...
AAO19447      588 EGDEIFDRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHa-------------------------------- 635  Emericella ni...
AAC39319      588 EGDEIFDRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHa-------------------------------- 635  Emericella ni...
AAB39507      499 PGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIEn-------------------------------- 546  Candida albicans
Q00313        497 PGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIEn-------------------------------- 544  Candida albicans
AAC14193      754 PENDLFDQLTTSSLNKYLKGFMENLSAKVFRTYNASLTLEKELAKMPes------------------------------- 802  Physarum poly...
XP_001351663  540 RDEGVFDQITCSKLNEYLKEIMPTLSAKVFRTYNASITLDQQLKRIKevygkttyslysgetelhkskkrksshltsdtn 619  Plasmodium fa...
1A35_A        434 -----------------------------------------------PDENIPAKILSYNRANRAVAILCNHQRAPPKTF 466  human
AAC18301      529 -----------------------------------------------KDASISDKVLAYNRANRMVAILCNHQRTISKTH 561  Pneumocystis ...
CAA29559      579 -----------------------------------------------KNLTLADKILFYNRANRTVAILCNHQRSVTKNH 611  fission yeast
EEU08906      511 -----------------------------------------------K-GSVAEKILKYNAANRTVAILCNHQRTVTKGH 542  Saccharomyces...
AAO19447      636 ------------------------------------------------TGNNAEKVKAYNDANRKVAILCNHKRTVGAAH 667  Emericella ni...
AAC39319      636 ------------------------------------------------TGNNAEKVKAYNDANRKVAILCNHKRTVGAVT 667  Emericella ni...
AAB39507      547 ------------------------------------------------EGTVAEKVAKFNAANRTVAILCNHQRTVSKTH 578  Candida albicans
Q00313        545 ------------------------------------------------EGTVAEKVAKFNAANRTVAILCNHQRTVSKTH 576  Candida albicans
AAC14193      803 ----------------------------------------------lIKATADEKVLFYNRCNREVAILCNHQRSLSKTH 836  Physarum poly...
XP_001351663  620 ilsdasdstindvnneydenginkklsyattvgkendvddknspievDVSNINELINFYNNANREVAILCNHQRSIPKQH 699  Plasmodium fa...
1A35_A        467 EKSMMNLQTKIDAKKEQLA------------------------------DA----------------R------------ 488  human
AAC18301      562 SAQMERIEDKILALKYQKIrlrkailtldpkl-----eksrpdlseavsDI----------------D------------ 608  Pneumocystis ...
CAA29559      612 DVQMERFAERIKALQYQRMrlrkmml-----------------nlepklAK----------------S------------ 646  fission yeast
EEU08906      543 AQTVEKANNRIQELEWQKIrckrailqldkdllkkepkyfeeiddltkeDE----------------Atihkri-----i 601  Saccharomyces...
AAO19447      668 AHQMEKMSERIKGQRYQKWrlkqmmldldpsl----kkkkgaqffeldeDI----------------Dkewikehqafli 727  Emericella ni...
AAC39319      668 RDQMEKMSERIKGQRYQKWrlkqmmldldpsl----kkkkgaqffeldeDI----------------Dkewikehqafli 727  Emericella ni...
AAB39507      579 GDSVQRINDKLKKFMWQKIrlkkmilqlepkl-----kkkdskyfeeidDLlkediehihhtiikrqR------------ 641  Candida albicans
Q00313        577 GDSVQRINDKLKKFMWQKIrlkkmilqlepkl-----kkkdskyfeeidDLikediehihhtiikrqR------------ 639  Candida albicans
AAC14193      837 TETMGKIDEKIAEFKKEKLqqqiaylkgkg---------kkpvlsdsesDE----------------Dtpkkatp---kk 888  Physarum poly...
XP_001351663  700 DTTMSKIKKQIELYNEDIKeykkylq-----------------hlkknsDK----------------Kf----------- 735  Plasmodium fa...
1A35_A        489 ----R----------------D----------------------------LKSA------KADAK--------------V 500  human
AAC18301      609 ----EdwikehqkvliekeydK----------------------------IKRKfqkdneKLISQ--------------N 642  Pneumocystis ...
CAA29559      647 ----K----------------PellakeegitdswivkhhetlyelekekIKKKfdreneKLAAE--------------D 692  fission yeast
EEU08906      602 dreiE----------------K----------------------------YQRKfvrendKRKFE--------------K 623  Saccharomyces...
AAO19447      728 eeqaQ----------------K----------------------------IKKKfekdneKLLAE--------------G 749  Emericella ni...
AAC39319      728 eeqaQ----------------K----------------------------IKKKfekdneKLLAE--------------G 749  Emericella ni...
AAB39507      642 ----E----------------Q----------------------------AKKKlerdneKLKLE--------------G 659  Candida albicans
Q00313        640 ----E----------------Q----------------------------AKKKlerdneKLKLE--------------G 657  Candida albicans
AAC14193      889 atpkK----------------E----------------------------TKSSdeatpnKKRKKdddeeeaddfketpK 924  Physarum poly...
XP_001351663  736 ---------------------I----------------------------FVSKvstldgTLRPN--------------K 752  Plasmodium fa...
1A35_A        501 -----------------MKDAKTK-KVVESKKK---------------AVQRLEEQLMKLEVQATDREENKQIALGTSKL 547  human
AAC18301      643 etpmpesr-lekflekiNEMKEEF-KIENEKGRvesktrgitietldlQIKKINERIHQMKALMIDKAQNKTTALGTSKI 720  Pneumocystis ...
CAA29559      693 pksmlpeselevrlkaaDELKKAL-DAELKSKKvdpgrss--meqlekRLNKLNERINVMRTQMIDKDENKTTALGTSKI 769  fission yeast
EEU08906      624 eellpesq-lkewlekvDEKKQEF-EKELKTGEvelksswnsvekikaQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKI 701  Saccharomyces...
AAO19447      750 ekemkase-letrleavKELEKKF-NKENKTGKveaegrsptvekleaSITKLQQRIENMELQAQDKEDNKEVALGTSKI 827  Emericella ni...
AAC39319      750 ekemkase-letrleavKELEKKF-NKENKTGKveaegrsptvekleaSITKLQQRIENMELQAQDKEDNKEVALGTSKI 827  Emericella ni...
AAB39507      660 kplltesd-ikdkldkiDELEKEY-QKELKTGKpivtkna-tveklkqQIETLENKILNVSIQLKDKEDNSEVSLGTSKM 736  Candida albicans
Q00313        658 kplltesd-ikdkldkiDELEKEY-QKELKTGKpivtkna-tveklkqQIETLENRILNVSIQLKDKEDNSEVSLGTSKM 734  Candida albicans
AAC14193      925 -----------------KKVKRALpDSVEKCKA---------------AIERVDTSINKWNIKKTEKDELKSVALTTSKI 972  Physarum poly...
XP_001351663  753 -------------------VKENM-KEESCKKK---------------LIT-LIKKVELLNNQMKVRDDNKTIALGTSKI 796  Plasmodium fa...
1A35_A        548 NFLDPRITVAWCKKWG 563  human
AAC18301      721 NYIDPRLTYAWCAKYG 736  Pneumocystis carinii
CAA29559      770 NYIDPRLTYSFSKRED 785  fission yeast
EEU08906      702 NYIDPRLSVVFCKKYD 717  Saccharomyces cerevisiae JAY291
AAO19447      828 NYIDPRLTVVFSKKFK 843  Emericella nidulans
AAC39319      828 NYIDPRLTVVFSKKFK 843  Emericella nidulans
AAB39507      737 NYIDPRLIVMFSKKFD 752  Candida albicans
Q00313        735 NYIDPRLIVMFSKKFD 750  Candida albicans
AAC14193      973 NYIDPRITAAWAKRVG 988  Physarum polycephalum
XP_001351663  797 NYMDPRITVAFCKKFE 812  Plasmodium falciparum 3D7
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