Conserved Protein Domain Family
PMD

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pfam10536: PMD 
Plant mobile domain
This domain was identified by Babu and colleagues in a variety of transposases.
Statistics
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PSSM-Id: 463139
Aligned: 30 rows
Threshold Bit Score: 315.443
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_015163307   69 GLYGIYRSNRPSIDRSLITSLVERWRPETHTFHFRTGEATITLQDVEVLYGLPVNGDPVLgdESIR-TIGDWqnICQRLL 147 
XP_009149244   50 GFGWFRLIGSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLLLGLAVDGKPVVtsVKERdEDPSQ--VCQRLL 127 
XP_009140611   59 GFGLFRRIGPMTLNNSLISALVERWRRETNTFHLPLGETTITLDEVSLVLGLQIDGDPVVg-pKVGdEAAMD--MCGKLL 135 
XP_019077711   60 gfkHLSMITDMSIDAPLISALVERWRRETNSFHMRVGEMTITLEDVFLILGLPIDGDPVIg-vTS--HACES--ICRKLL 134 
F4IFD0         61 GFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIg-lTY--TTCSA--VCERYL 135  thale cress
EEF42018       80 GFGYLRRIPSISLDNPLISALIERWRKETNTFHLRVGEMTITLEDVALLLGLAIDGEPVLg-vTY--TSCKP--ICEKFL 154 
KRH46089       67 GFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGEPVIg-iTY--TACSS--VCEKYL 141 
XP_015166227   71 gfrgVVEVGCVPYDWGVITALIERWRPETHTFHMRTGEATITLQDVELMFGMCVDGDPLLqaGARDiSVQGWqqLIYELT 150 
Q9LNG5         68 GLYGVYKVAFIQLDYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVTg----S-TKYNWadLCEDLL 142  thale cress
EMS47434       62 GFYHLCFLKRVQLDHALLNALVERWRRETQTFHLRFGEMAVLLKDVAILTGLRVDGTPVTg----A-TGCHWeqLCLELL 136 
XP_015163307  148 GFIP-Rp-qNfNRSSLKVTALNAHMLeqqqlpnlatqdmINQMARCYMFWMIAGMMMADTSGNYLKLMFLPMLEDLSVVS 225 
XP_009149244  128 GKLPqG---ElSGNRVTARWLKESFAecpkg---atkeeVEFHTRAYLIYLVGSTIFATTDPSKISVDYLILFEDFEKAG 201 
XP_009140611  136 GKLPsAankEvNCSRVKLNWLKRTFSecped---assdvVKCHTRAYLLYLIGSTIFATTDGDKVSVKYLPLFEDFDRAG 212 
XP_019077711  135 GNVPrSe--HrSGRMVKLSWLRESFSrcped---aseeqIKRSTRAYLLYLLGCTIFSSSTGNKVPVMYLQFFENFDDTK 209 
F4IFD0        136 GKSPaSn--SaSGGMVKLSWLKDNFSecpdd---asfeeVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAG 210  thale cress
EEF42018      155 GKVPdAg--YmSGGMVKLSWLKEYFSqcped---apleeIERHTRAYLLYLVGSTIFSTTTGNKVPIMYLPLFEDFEKAG 229 
KRH46089      142 GRSPeSg--YtSGGMVKLSWLKEFFSrcped---aplevIEQHTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFDRCG 216 
XP_015166227  151 GWAPdEn-cFtGVSRLYVGSLVAYMDgldaitdqstevnVQQRVRLYLLWLCGGTIFPDKSGCKLSLDFLLDMRDLSTMG 229 
Q9LNG5        143 GHRP-Gp-kDlHGSHVSLAWLRENFRnlpad---pdevtLKCHTRAFVLALMSGFLYGDKSKHDVALTFLPLLRDFDEVA 217  thale cress
EMS47434      137 GQEPp----QiKGGSINIAWLYDTFSnlper---anqseIEHATRAYIMYQIGCSLFPDPSGTRVHLRYLALLRDFDASG 209 
XP_015163307  226 SYSWGSATLACLYHFLCKASQSnqNEIAGFLPLLQIWAWERVTVLKPqviaqrdtennflAGLPRG---PHATRWFAHFs 302 
XP_009149244  202 EYAWGAAALAFLYRQIGNASQRsqSIIGGCLTLLQCWSYFHLNIDRPkrtt---------------rqfPLALLWkg--- 263 
XP_009140611  213 RYAWGAAALACLYRALGNASLKsqSNICGCLTLLQCWSYFHLDIGRPekae---------------asfPLALLWkg--- 274 
XP_019077711  210 RYAWGAAALAYLYRALGNASLNgqTSICGSITLLQCWSYEHLKVGRPalenfh----------ksaqdfPRALKW--RRk 277 
F4IFD0        211 TFAWGAAALAFLYRALGNASVKsqSTICGCLTLLQCWSYYHLNIGRPklnrep-----------ihdqfPFVLKW--KGk 277  thale cress
EEF42018      230 NYAWGAAALAFLYRALGRATLKsqSTISGCLTLLQCWSYFHLNIAQPkfyqdp-----------vrdcfPFVHWW--KGk 296 
KRH46089      217 QYAWGAAALSFLYRALGNASLKtqSTISGCLTLLQCWSYFHLNIGRPklnlel-----------mhdrfPFVLRW--KGk 283 
XP_015166227  230 TQAWGASALSYLYNCLCRASMSaaSDVCGFLSLLQVWAWERLIPMQPslrppre---------pmsphtALARKWTRCRv 300 
Q9LNG5        218 KLSWGSATLALLYRELCRASKRtvSTICGPLVLLQLWAWERLHVGRPgrlkdv--gasymDGIDGPlpdPLGCRWRASLs 295  thale cress
EMS47434      210 EMAWGAAVLAHLYRELGKASMKgkANCCAFLTLLQIWAWEHIQIGRPerlenk----------slngdqPLGCRWDVPFk 279 
XP_015163307  303 wtNTtk-hvLKVFRDALDSmTEDQFIWEPYSDdLIENLPDYcRIGRDIWRVRAPIFCWDVVEVHLPDRVMRQFGLKQTIP 381 
XP_009149244  264 rqQSrskndLFKYRKALDDlDPSHVSWCPFEGdLDI-VPQSfKDNLLLGRSRTKLIAPKVVEWHLPDRCMKQFGLCQVIP 342 
XP_009140611  275 -kGSrsktdLSEYRRELDDlDPTKICWCPYERyENM-IPPHvKAKLSLGRSKTTLVCFEKIELHFPDRCLRQFGKRQPIP 352 
XP_019077711  278 rkVYsnsksLSVYREALDTlELSDVTFLPYIDmDNALIQEEmRKQMTIGRSSTMLICFDKAERHLPDRCLRQFGMHRSPP 357 
F4IFD0        278 qnGPtanrdVVFYRKALDVmKPTDVVWLPYENmNGGDMSDRmRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIP 357  thale cress
EEF42018      297 qsAAtvkrdIVFYRKALDSlNPSDVEWLPYNNiDSTLIPENvRSSLILGRSKTMLICFDKAERHLPDRCLRQHGMHQGIP 376 
KRH46089      284 qsGPtanrdVVFYRKSLDSlKPCDVEWLPYRNmDSMVIPEYiKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIP 363 
XP_015166227  301 rqNEvr-gvLAICRDVLDNlNDGQFVWEPYSEtIINGLPEWcRRGRDVWMAQTPLICGIYREWHMVDRVLRQFGREQHIP 379 
Q9LNG5        296 hkENpr-ggLDFYRDQFDQqKDEQVIWQPYTPdLLAKIPLIcVSGENIWRTVAPLICFDVVEWHRPDRVLRQFGLHQTIP 374  thale cress
EMS47434      280 nrENvrsidQEFYRHGLDTiTDCQITWDPYKPsLIDGLPALcTLGSAVWQSRTPLICFQIVEMHVPDRVLLQFGMMQHIP 359 
XP_015163307  382 TPFlfdathf-hhdrrgrPnTNWKLeHAQWLPFWNQRLqYI--CDApFNREPLRYDDPYLIWFK 442 
XP_009149244  343 GEVphrk-------sektHdEDLLEdMNTADEEWMRRReNI--VENeGGN--VD-ETEYMQWFN 394 
XP_009140611  353 QKVkrrd-------rknrRhDDLDTsMTAACEEWAERGdHI--VDGpGGGNVVD-DGAYMEWYA 406 
XP_019077711  358 TPVkqwkrk----srdtyEsTDLSKkMASELREWKGRRnHI--IKDdLDG---D-ESRYMDWYL 411 
F4IFD0        358 ADVqrwvrk----srgvdGgVDLSNkMESELSEWEMRWeNI--VPDdVQG--VD-EADYMRWYl 412  thale cress
EEF42018      377 KDVqhwerk----srgvdSgIHLSGkMESELNEWSARYhHI--VQDd-DG--VD-EIEYMNWYL 430 
KRH46089      364 DDVerwerk----srgvdGgVDLSGkMESELNEWMDRQvSI--VDGd-EG--AD-ESEYMEWYM 417 
XP_015166227  380 GPCttfdhlhfkrdkrfrVtQQDIHyFEFMAAFWAHRRdNI--IRAeLLIEASRPRLEYFDWYH 441 
Q9LNG5        375 APCdnekalh-aidkrgkSeYDWSArHSRHIGLWEARVsSV--VSGePECSPMDYNDPYMEWYR 435  thale cress
EMS47434      360 DPVeaverv----tmqgkTdEDWSTyHEKYIKQWDNRLhSVagLHNaVNSDPTHARNCYLEWYw 419 
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