5ZB8


Conserved Protein Domain Family
PfuEndoQ-like

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cd19067: PfuEndoQ-like 
lesion-specific endonuclease similar to Pyrococcus furiosus EndoQ
Pyrococcus furiosus EndoQ is a lesion-specific endonuclease which is assumed to be involved in DNA repair pathways in Thermococcales. It recognizes a deaminated base and hydrolyzes the phosphodiester bond 5' to the site of the lesion. Initially identified as a hypoxanthine-specific endonuclease, it has now been shown that EndoQ also recognizes uracil, xanthine, and apurinic/apyrimidinic (AP) sites in DNA, and that a homolog in Bacillus pumilus shares functional properties of the archaeal EndoQs.
Statistics
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PSSM-Id: 410989
Aligned: 715 rows
Threshold Bit Score: 284.689
Created: 7-Oct-2002
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 7 residue positions
Conserved feature residue pattern:[HQE] H x H [RSTC] H [DN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:these two zinc ions are thought to be involved in catalysis
  • Structure:5ZB8: Pyrococcus furiosus EndoQ binds two zinc ions at the active site; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                                                                         
5ZB8_A         4 DGDLHIHSHYSKAVSkl-------mtFPIIAENAKLKGLn-LVGTGDSlNPHWEKELLKHSkpiddg------------- 62  Pyrococcus furi...
WP_011640032   5 FADLHIHIGRSQGRAvkitasreltlKNILFREAPRKGLe-MVGIVDAgSTLVAAEIEEMLlhgeleeqp---------- 73  Syntrophomonas ...
WP_013174638   5 YADLHVHIGRAGERPvkvtassqltlSNLILWGARRKGLd-VVGIVDAaSPLVIQELETMLesgallpaa---------- 73  Syntrophothermu...
WP_052729646   5 YADLHIHIGRAGERPvkitaspqltlENIIFKTAPLKGLh-MVAVVDAgSLAVSQEIEILLeggklreip---------- 73  Syntrophomonas ...
WP_156202924   5 YADLHIHIGRSKGRPvkitasrnlevKPLIYNDAPRKGLd-MIGVVDAgSPLVSQEIQEMInsgelnehp---------- 73  Candidatus Synt...
WP_144230893  41 AADLHIHSRYASAVSkd-------mtLENISLYARKKGVd-LIGTGDCvQPDWLRELEAGLqpvksqpgffalrkelgea 112 Opitutaceae bac...
PKM78702       5 FADLHIHIGSAKGKAvkitasrqlqlRTIIYHDAPRKGLd-MVGIVDSgSTLVSAEIEEMLadgdlvele---------- 73  Firmicutes bact...
WP_096054747   4 AADLHLHSRYAGGVSpa-------mtLENIALWAQRKGVd-LLATGDClQADWLHEIETKLtpaepgffalrpdiesal- 74  Nibricoccus aqu...
WP_015907814   4 YADLHVHIGFSNGRYikvps-sktltLENIIKTAKDEKGlnVIGIVDFfCKDVIEETDKLLdkgklelkdg--------- 73  Caldicellulosir...
WP_045169530   4 YADLHVHIGFSNQRYikips-skdltIENILRVSKNEKGlhVVGIVDFlCDDVLFEIESLIdcgkilfkdn--------- 73  Caldicellulosir...
Feature 1                                  #       #                             #               
5ZB8_A        63 -------------tfevngVKFILTCEVEDKrRVHHLLIFpTLSQVREFREKVKIYStniESEGRPNLNltAEEIAEMAN 129 Pyrococcus furi...
WP_011640032  74 ----------qggflaangVLMIAGAEVESReGVHWIIFLpFLHSIKSLQKYLRSRVr-nMTLSTQKADatAIDLLNLSY 142 Syntrophomonas ...
WP_013174638  74 ----------dgglasgsgLLLLLGAEVETVeGAHFLSYLpDLTAVKEFRVFLESRVs-nLNLSTPKARvaAKELLRATV 142 Syntrophothermu...
WP_052729646  74 ----------qgglladngVVLILASECECReGVHLISYLpDLISLKDWQKHLQSRVt-nLTLSTQRVDmgFIDILYLCR 142 Syntrophomonas ...
WP_156202924  74 ----------qgglrakngVLLILGCEIETKeGVHLISYLpFFKNLIEWQKYMQTRVr-nLTLSTQKANitFKELINLAF 142 Candidatus Synt...
WP_144230893 113 asaqlseklrrplrfllstEIHCSPAGTAELrGPHHLVYFpTFDVAWAFHRKLSPYGd--LNEGRPRVRlsSRELLEMVL 190 Opitutaceae bac...
PKM78702      74 ----------kggfiarngVLLISACEVESReGVHIISYLpTMQRIRDWQAYIKSRVh-nTRLSTQKVDasILDLIMLSS 142 Firmicutes bact...
WP_096054747  75 -heklpahlhrplrfvlstEVNCAPPGTRSLgGIHHLLYFpSLETIHTFREKLLPFGh--FQEGRPDLAlnSRQLLELVL 151 Nibricoccus aqu...
WP_015907814  74 ----------slyserlliIPAAEIELRFCSnDFHCLVFFeDYEKLKDFRKIIKTYFn-qIDFSCPVFRgqISEFEKIVS 142 Caldicellulosir...
WP_045169530  74 ----------nlyfedlliIPAAEIELRYNQkDFHCLIYFeSIDKLKEFKIQNKKYFn-qLNFSCPVFKgnIEDFEKIAK 142 Caldicellulosir...
Feature 1                   #                                                            #       
5ZB8_A       130 ELd--iLIGPAHAFTPWTSLyk-----eYDSLKDAYGdak--idfLELGLSADSDMADMIKAHHsiPYLSNSDAHSpnPH 200 Pyrococcus furi...
WP_011640032 143 LLe--gIFCPAHAFTPHKGAyg----fwTDSLADKMGrdlaqvkvLELGLSSDSLMADMIAETSnfTFLSNSDAHS--LA 214 Syntrophomonas ...
WP_013174638 143 ELg--gIFCPAHAFTPHKGAyg----cwIERLAVGLGddvgkveaLELGLSADSKMAHMISETDafCFLSNSDAHS--LA 214 Syntrophothermu...
WP_052729646 143 DLd--gIFCPAHVFTPHKGTygawtdrlRPRLSQAFElv----rvIELGLSADTYMADLLKETAhfSLLSNSDAHS--LP 214 Syntrophomonas ...
WP_156202924 143 ICd--gFVCPAHAFTPHKGVyg----fyTENLTKELGkdisqikaLELGLSADTNMADLITETRnfTFLSNSDAHS--SI 214 Candidatus Synt...
WP_144230893 191 EHgegsEFAPAHWLNPFFSIcgsq-gggDGTLVEQFGslaphvtlVETGLTSTPPMCRRVSGLDgrRLYSNSDAHS--LE 267 Opitutaceae bac...
PKM78702     143 QLd--gIFCFAHAFTPHKGVyg----mwTDKLASKLGedirhikvLELGLSADTDMADMLEETRgcTFLSNSDAHS--SP 214 Firmicutes bact...
WP_096054747 152 AHdpacHLAPAHVFNPWFSAlgt--vggGRTLDAVFGdltphllaAETGLTSTPPMCRRIVSLDrlALFSCSDAHS--LD 227 Nibricoccus aqu...
WP_015907814 143 SFg--lLTVPAHAFTPYKGFys-----vAQRVEEVFKkie--vfsIELGLSADSKMVSYLCDVQkrSLLSNSDAHS--LK 211 Caldicellulosir...
WP_045169530 143 DFd--lFVVPAHSFTPYKGFys-----aASGIDEVFKtle--iytIELGLSADSYMVQDVFDVQtrTLLSNSDAHS--LR 211 Caldicellulosir...
Feature 1                                                                                        
5ZB8_A       201 RLGREFNRFEvkdvTFEEIRKAIKGvggrKIMLNAGLDPRLGKYHLTACSRCYtkytlQDAVSls--wKCPkCGGi-IKK 277 Pyrococcus furi...
WP_011640032 215 NIGREYNLLRmkqkNFAEFRYCLENyegrRILANYGMDPLMGKYHRSFCLQCEri--aAEAPPv---rACAnCGSenLVA 289 Syntrophomonas ...
WP_013174638 215 SLGREYNCLLmenpSFAEVRRAVRGekgrQVLANYGMHPMLGKYHRSFCPLCS-----AIATGeapvtVCDrCGNrkMVL 289 Syntrophothermu...
WP_052729646 215 NIGREFNLLQvpekSFADLKNCLKGngesRIIANYGLDPRMGKYHRSYCPDCDh---iTDATApv--rACCiCGSsnIVM 289 Syntrophomonas ...
WP_156202924 215 NVGREYNLLRirdmNFNELRLCLENidgrKIIANYGIDPQMGKYNRSYCSSCE-----KITEDdapviVCSsCGSrdIIM 289 Candidatus Synt...
WP_144230893 268 NIGREVTLIEga-tDYEAVFAALRGigsgRVVSTVKYAIERTRYFRNWCGICQ-----ESVDGm----LCPtCGRk-LAM 336 Opitutaceae bac...
PKM78702     215 NVGREYNLLRmgekNFQELRLCLANkngrRVLANYGMHPSLGKYHRSFCPGCDki-itDEPPIs----LCPlCGNskIVM 289 Firmicutes bact...
WP_096054747 228 NIGREFTLLDie-pSYNALFAALRSgspkHILGTRKFPLHRTRYFLNWCGQCQ-----DNFDAr----TCPkCRRp-LVD 296 Nibricoccus aqu...
WP_015907814 212 NIAREFNEIEvenvSAKDVIKSLKEn---RIKANYGINPKLGKYHKSYCNRCNss--fNLKIQna--iLCPfCKSrdIVI 284 Caldicellulosir...
WP_045169530 212 NIAREFNEIEiphlTTDKVLESIKEn---GLVANYGVNPKLGKYHKSYCKSCNhs-fnLEQERf----VCPlCGKttVVP 283 Caldicellulosir...
Feature 1                                                                                        
5ZB8_A       278 GVRDRILELADts--ekPKDRPPYVRLAPLAEIIamvlgkgieskavKLLWNRFLREFgSEIRVLIDLp----IESIASV 351 Pyrococcus furi...
WP_011640032 290 GVYDRIVSIRDyseprqPLGRAPYYYRVPLQKLPgi----------gPKTLEKLRAGLgSEIDICENAn----QEDISRI 355 Syntrophomonas ...
WP_013174638 290 GVWDRICQIRDrvenpkSSETVPYHYRVPLAMLPgv----------gPRTVEKLVEHFeNEIHVIENAd----LDEIKQV 355 Syntrophothermu...
WP_052729646 290 GVYDRIMEIKDdqp-cpPEVRPHYHYRVPLSQIPgv----------gIKTYQKLLSTGsSEIEILEKMp----GGEIALL 354 Syntrophomonas ...
WP_156202924 290 GVYDRIVQIKDrdelvhPIGRPPYLYRVPLKDIPgv----------gAKMYDKLIKFFfNEIEVLEKAt----IEDIEKI 355 Candidatus Synt...
WP_144230893 337 GSRDRVEQIADraepvfPADAPPWMMILPLAEVLsdvlgvddsakavQQQHARLLEELgNERYILTEAt----HDEIARV 412 Opitutaceae bac...
PKM78702     290 GVFDRIVVIRDydsprhPNERPPYYYRIPLKDLPgi----------gPKTYNKLLGVFpNEIELIEKIl----LEDISMV 355 Firmicutes bact...
WP_096054747 297 GSRDRLEKIADrssplfPAFTPPFQELLPLATLIahlnhrkpdsdivTTLSRQLIDTVgHERFLLTEAt----ADDINRA 372 Nibricoccus aqu...
WP_015907814 285 GVEDRISWLCRte---nPIEKPPYFYTFPFELVKgf----------gQKTFQKIIDVFgNEINFIKSLn----NGTFKNY 347 Caldicellulosir...
WP_045169530 284 GVEDRIHMLKKtd---iRSKKPPYFYTFPFELVEgf----------gKRTREKIIESFkTEVNFVKALnkgqdYENLKSL 350 Caldicellulosir...
Feature 1                                                
5ZB8_A       352 h--eGVAKAIWAYRNNk------lIIVPGGg--gKYGEIR 381 Pyrococcus furiosus
WP_011640032 356 ag-eRVAALIIEMRKGr------lDISPGGg--gRYGKVK 386 Syntrophomonas wolfei
WP_013174638 356 ag-aETATVIGRMRRGk------lSFVPGGg--gKYGKVQ 386 Syntrophothermus lipocalidus
WP_052729646 355 ag-qDIADTILAMRMGr------lDIDAGGg--gKYGKVK 385 Syntrophomonas zehnderi
WP_156202924 356 ag-dNIAQIISKMRINr------lDITPGGg--gKYGKVK 386 Candidatus Syntrophocurvum alkaliphilum
WP_144230893 413 gt-aQLARIIVGQRTQppgrkppkLKRAGGd--dQFSLGI 449 Opitutaceae bacterium 53C-WASEF
PKM78702     356 ag-gTIAATIRDMRLGr------lGISAGGg--gKYGKVK 386 Firmicutes bacterium HGW-Firmicutes-15
WP_096054747 373 gi-pQIATAILAQRAQpstyfarpTREPPGpptqQFSLPL 411 Nibricoccus aquaticus
WP_015907814 348 nideNVAQKLVRFMNQd------yTVKFGAg--gHFGRII 379 Caldicellulosiruptor bescii
WP_045169530 351 vg-eGIWRKLDKYLRGq------ySIEFGAg--gYFGKIR 381 Caldicellulosiruptor sp. Rt8.B8

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